Variant report

Variant	rs337264
Chromosome Location	chr4:130062624-130062625
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:130061469..130063287-chr4:130063449..130064968,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10028124	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs10857134	0.91[CEU][hapmap];0.89[CHB][hapmap];0.85[JPT][hapmap]
rs12650832	0.87[CEU][hapmap];0.80[CHB][hapmap];0.86[JPT][hapmap]
rs1450727	0.91[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap]
rs1699390	0.91[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap]
rs175964	0.91[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap]
rs1947269	0.86[CEU][hapmap];0.80[JPT][hapmap]
rs2218814	0.91[CEU][hapmap];0.84[CHB][hapmap];0.85[JPT][hapmap]
rs2592953	0.91[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap]
rs2592955	0.91[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap]
rs2592956	0.91[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs280592	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs280602	0.95[CEU][hapmap]
rs2893267	0.91[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap]
rs337265	0.86[CHB][hapmap];0.83[JPT][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs337273	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs492565	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4975192	0.82[CEU][hapmap];0.84[JPT][hapmap]
rs4975287	0.81[CEU][hapmap];0.90[CHB][hapmap]
rs4975288	0.91[CEU][hapmap];0.84[CHB][hapmap];0.85[JPT][hapmap]
rs4975289	0.91[CEU][hapmap];0.84[CHB][hapmap];0.85[JPT][hapmap]
rs4975290	0.91[CEU][hapmap];0.84[CHB][hapmap];0.85[JPT][hapmap]
rs4975291	0.85[CEU][hapmap];0.84[CHB][hapmap];0.85[JPT][hapmap]
rs4975292	0.91[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap]
rs498435	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs502319	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs536631	0.95[CEU][hapmap];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6814109	0.90[CEU][hapmap];0.84[CHB][hapmap];0.86[JPT][hapmap]
rs6817901	0.91[CEU][hapmap];0.84[CHB][hapmap];0.86[JPT][hapmap]
rs6820403	0.91[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap]
rs6820637	0.91[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap]
rs6821814	0.91[CEU][hapmap];0.84[CHB][hapmap];0.85[JPT][hapmap]
rs6830229	0.89[CEU][hapmap];0.85[JPT][hapmap]
rs789986	0.91[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869258	chr4:129191619-130138148	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv534538	chr4:129799138-130431688	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv879931	chr4:129939775-130178102	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv511266	chr4:130060230-130072652	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv32610	chr4:130062342-130065491	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:130060200-130065800	Weak transcription	K562	blood
2	chr4:130060400-130062800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr4:130060400-130063400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr4:130060400-130065800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr4:130060400-130066000	Weak transcription	Pancreas	Pancrea

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