Variant report

Variant	rs338891
Chromosome Location	chr5:145157152-145157153
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10463270	0.89[CEU][hapmap];0.82[CHB][hapmap];0.89[EUR][1000 genomes]
rs12173238	0.88[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs1654149	0.91[EUR][1000 genomes]
rs1821250	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1897545	1.00[CEU][hapmap];0.85[JPT][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs338885	0.88[CEU][hapmap]
rs338888	0.88[CEU][hapmap]
rs338892	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs338893	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs338894	0.84[CHB][hapmap];0.90[EUR][1000 genomes]
rs338895	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs338896	0.82[EUR][1000 genomes]
rs338897	0.83[EUR][1000 genomes]
rs4304121	1.00[CEU][hapmap]
rs4305683	0.89[CEU][hapmap];0.82[CHB][hapmap];0.80[EUR][1000 genomes]
rs4460183	0.89[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs4628045	0.91[EUR][1000 genomes]
rs582130	0.81[EUR][1000 genomes]
rs587224	1.00[CEU][hapmap]
rs677498	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs680626	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6867440	0.88[CEU][hapmap]
rs6868309	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs6871209	1.00[CEU][hapmap]
rs6871842	0.86[CEU][hapmap]
rs6892276	0.88[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021851	chr5:145106686-145187560	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145105400-145179000	Weak transcription	Pancreas	Pancrea
2	chr5:145109400-145194400	Weak transcription	Colonic Mucosa	Colon
3	chr5:145111400-145166800	Weak transcription	K562	blood
4	chr5:145114000-145163400	Weak transcription	Small Intestine	intestine
5	chr5:145138000-145157800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr5:145139000-145165400	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr5:145140000-145157800	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr5:145140400-145157200	Weak transcription	Left Ventricle	heart
9	chr5:145141200-145194400	Weak transcription	Stomach Smooth Muscle	stomach
10	chr5:145142400-145162400	Weak transcription	Rectal Smooth Muscle	rectum
11	chr5:145147400-145161800	Weak transcription	Lung	lung
12	chr5:145148800-145166600	Weak transcription	Fetal Heart	heart
13	chr5:145152000-145167200	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr5:145152200-145171000	Weak transcription	Stomach Mucosa	stomach
15	chr5:145153800-145157200	Enhancers	Hela-S3	cervix
16	chr5:145154200-145157200	Enhancers	HSMMtube	muscle
17	chr5:145154200-145157800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr5:145154400-145157400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr5:145154400-145159800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr5:145154600-145157200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr5:145154600-145157800	Weak transcription	Primary hematopoietic stem cells	blood
22	chr5:145154600-145166600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr5:145154600-145169600	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr5:145154800-145157200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr5:145154800-145157200	Enhancers	Adipose Nuclei	Adipose
26	chr5:145155000-145157200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr5:145155000-145157400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr5:145155000-145157400	Enhancers	HMEC	breast
29	chr5:145155000-145158800	Enhancers	Muscle Satellite Cultured Cells	--
30	chr5:145155200-145157200	Enhancers	NHLF	lung
31	chr5:145155400-145157400	Weak transcription	Fetal Intestine Large	intestine
32	chr5:145155400-145167200	Weak transcription	Right Atrium	heart
33	chr5:145155600-145157200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr5:145155600-145157200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr5:145155600-145157400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr5:145156000-145160400	Weak transcription	Brain Substantia Nigra	brain
37	chr5:145156000-145171400	Weak transcription	Aorta	Aorta
38	chr5:145156200-145157600	Enhancers	Placenta Amnion	Placenta Amnion
39	chr5:145156200-145160600	Weak transcription	Brain Hippocampus Middle	brain
40	chr5:145156400-145157200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr5:145156400-145157400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr5:145156400-145160600	Weak transcription	HUVEC	blood vessel
43	chr5:145156400-145166000	Weak transcription	Fetal Lung	lung
44	chr5:145156400-145167200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr5:145156800-145157200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr5:145156800-145157200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr5:145156800-145157200	Strong transcription	Duodenum Mucosa	Duodenum
48	chr5:145156800-145157200	Enhancers	Ovary	ovary
49	chr5:145156800-145157600	Strong transcription	Fetal Intestine Small	intestine
50	chr5:145156800-145157600	Enhancers	Right Ventricle	heart

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