The 2.0 version of rSNPBase

Variant report

Variant rs338898
Chromosome Location chr5:145176221-145176222
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:52 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:145105400-145179000 Weak transcription Pancreas Pancrea
2 chr5:145109400-145194400 Weak transcription Colonic Mucosa Colon
3 chr5:145141200-145194400 Weak transcription Stomach Smooth Muscle stomach
4 chr5:145158400-145176800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
5 chr5:145158400-145177000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
6 chr5:145158400-145179000 Weak transcription Gastric stomach
7 chr5:145158400-145196400 Weak transcription Primary hematopoietic stem cells short term culture blood
8 chr5:145158400-145207000 Weak transcription Esophagus oesophagus
9 chr5:145161000-145176600 Weak transcription HUVEC blood vessel
10 chr5:145161000-145183400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
11 chr5:145162800-145198200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
12 chr5:145162800-145212800 Weak transcription Rectal Smooth Muscle rectum
13 chr5:145165800-145184800 Weak transcription Duodenum Smooth Muscle Duodenum
14 chr5:145167000-145176800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
15 chr5:145167200-145185200 Weak transcription K562 blood
16 chr5:145167400-145176800 Weak transcription ES-I3 Cell Line embryonic stem cell
17 chr5:145167400-145200600 Weak transcription Fetal Adrenal Gland Adrenal Gland
18 chr5:145167600-145176800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
19 chr5:145167800-145179000 Weak transcription Ovary ovary
20 chr5:145167800-145191600 Weak transcription Left Ventricle heart
21 chr5:145167800-145194800 Weak transcription Fetal Lung lung
22 chr5:145168000-145183000 Weak transcription Fetal Intestine Small intestine
23 chr5:145168000-145203600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
24 chr5:145168200-145176400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
25 chr5:145168200-145191200 Weak transcription Fetal Heart heart
26 chr5:145170200-145195400 Weak transcription HepG2 liver
27 chr5:145170600-145213400 Weak transcription Placenta Amnion Placenta Amnion
28 chr5:145171800-145176400 Weak transcription Primary hematopoietic stem cells blood
29 chr5:145171800-145179000 Weak transcription Aorta Aorta
30 chr5:145171800-145179000 Weak transcription Lung lung
31 chr5:145171800-145188000 Weak transcription Fetal Stomach stomach
32 chr5:145172800-145176600 Weak transcription Adipose Nuclei Adipose
33 chr5:145172800-145191000 Weak transcription Fetal Muscle Leg muscle
34 chr5:145172800-145196200 Weak transcription Skeletal Muscle Female skeletal muscle
35 chr5:145172800-145214200 Weak transcription Right Ventricle heart
36 chr5:145173000-145176800 Weak transcription HUES64 Cell Line embryonic stem cell
37 chr5:145173400-145177400 Strong transcription Fetal Intestine Large intestine
38 chr5:145173600-145176400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
39 chr5:145173600-145177200 Strong transcription Rectal Mucosa Donor 31 rectum
40 chr5:145173800-145176600 Weak transcription Muscle Satellite Cultured Cells --
41 chr5:145173800-145176800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
42 chr5:145174200-145209200 Weak transcription Colon Smooth Muscle Colon
43 chr5:145175200-145178800 Weak transcription Rectal Mucosa Donor 29 rectum
44 chr5:145175200-145205000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
45 chr5:145175400-145179000 Weak transcription Duodenum Mucosa Duodenum
46 chr5:145175600-145176800 Weak transcription Sigmoid Colon Sigmoid Colon
47 chr5:145175600-145183000 Weak transcription Breast Myoepithelial Primary Cells Breast
48 chr5:145175800-145176800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
49 chr5:145175800-145177000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
50 chr5:145176000-145176800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast

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Last update: Aug 31, 2015