Variant report

Variant	rs34024339
Chromosome Location	chr9:7103795-7103796
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr9:7103786-7103915	HUVEC	blood vessel:	n/a	n/a
2	POLR2A	chr9:7103772-7104170	HUVEC	blood vessel:	n/a	n/a
3	SP1	chr9:7103715-7104269	A549	lung:	n/a	n/a
4	SETDB1	chr9:7103557-7104313	U2OS	brain:	n/a	n/a
5	TCF12	chr9:7103638-7104363	A549	lung:	n/a	n/a
6	NR3C1	chr9:7103785-7104195	A549	lung:	n/a	n/a
7	FOSL2	chr9:7103696-7104240	A549	lung:	n/a	n/a
8	EP300	chr9:7103703-7104292	A549	lung:	n/a	n/a
9	CEBPB	chr9:7103761-7104150	IMR90	lung:	n/a	n/a
10	FOXA2	chr9:7103716-7104309	A549	lung:	n/a	n/a
11	KAP1	chr9:7103391-7104308	U2OS	brain:	n/a	n/a
12	POLR2A	chr9:7103749-7104244	HUVEC	blood vessel:	n/a	n/a
13	NR3C1	chr9:7103752-7104301	A549	lung:	n/a	n/a
14	POLR2A	chr9:7103795-7103821	A549	lung:	n/a	n/a
15	FOS	chr9:7103779-7104129	HUVEC	blood vessel:	n/a	chr9:7103965-7103976
16	NR3C1	chr9:7103645-7104346	A549	lung:	n/a	n/a

Variant related genes	Relation type
KDM4C	TF binding region

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs16925294	1.00[AMR][1000 genomes]
rs7024566	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892166	chr9:6602821-7222495	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1023906	chr9:6731786-7372132	Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv613259	chr9:7032776-7541338	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1015874	chr9:7048807-7434890	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv539971	chr9:7048807-7434890	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv869932	chr9:7068359-7133384	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv892189	chr9:7091968-7150997	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv892190	chr9:7094860-7186074	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:7012200-7111200	Weak transcription	Colonic Mucosa	Colon
2	chr9:7061200-7104600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr9:7075600-7105800	Weak transcription	NHLF	lung
4	chr9:7077800-7103800	Weak transcription	HSMM	muscle
5	chr9:7078200-7103800	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr9:7086600-7105600	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr9:7087200-7103800	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr9:7088800-7128000	Weak transcription	Brain Cingulate Gyrus	brain
9	chr9:7090200-7104000	Weak transcription	Right Ventricle	heart
10	chr9:7092800-7104200	Weak transcription	Left Ventricle	heart
11	chr9:7094200-7103800	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr9:7095400-7107400	Weak transcription	Fetal Kidney	kidney
13	chr9:7098000-7103800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr9:7098600-7103800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr9:7098600-7103800	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr9:7098600-7103800	Weak transcription	Brain Substantia Nigra	brain
17	chr9:7098600-7103800	Weak transcription	Osteobl	bone
18	chr9:7098600-7118000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr9:7098800-7108400	Weak transcription	HSMMtube	muscle
20	chr9:7099000-7106800	Weak transcription	Hela-S3	cervix
21	chr9:7099600-7103800	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr9:7099800-7103800	Weak transcription	Adipose Nuclei	Adipose
23	chr9:7099800-7103800	Weak transcription	NHEK	skin
24	chr9:7100400-7103800	Weak transcription	Primary hematopoietic stem cells	blood
25	chr9:7100800-7120200	Strong transcription	Primary B cells from cord blood	blood
26	chr9:7101200-7103800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr9:7102600-7104200	Weak transcription	NHDF-Ad	bronchial
28	chr9:7102800-7114000	Strong transcription	Primary T cells from cord blood	blood
29	chr9:7103000-7104000	Enhancers	Fetal Heart	heart
30	chr9:7103000-7105600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr9:7103000-7106000	Strong transcription	Primary T cells fromperipheralblood	blood
32	chr9:7103000-7110200	Strong transcription	Primary T helper cells fromperipheralblood	blood
33	chr9:7103000-7148600	Strong transcription	Primary B cells from peripheral blood	blood
34	chr9:7103200-7103800	Enhancers	HUES6 Cell Line	embryonic stem cell
35	chr9:7103200-7103800	Enhancers	HUES64 Cell Line	embryonic stem cell
36	chr9:7103200-7103800	Enhancers	iPS-18 Cell Line	embryonic stem cell
37	chr9:7103200-7104000	Enhancers	H1 Cell Line	embryonic stem cell
38	chr9:7103200-7104000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr9:7103200-7104000	Strong transcription	Primary T killer memory cells from peripheral blood	blood
40	chr9:7103200-7104200	Enhancers	ES-I3 Cell Line	embryonic stem cell
41	chr9:7103200-7104200	Enhancers	iPS-15b Cell Line	embryonic stem cell
42	chr9:7103200-7104200	Enhancers	HUVEC	blood vessel
43	chr9:7103200-7104600	Strong transcription	Primary monocytes fromperipheralblood	blood
44	chr9:7103200-7104600	Strong transcription	Fetal Thymus	thymus
45	chr9:7103200-7104600	Strong transcription	Monocytes-CD14+_RO01746	blood
46	chr9:7103200-7104800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr9:7103200-7104800	Enhancers	Placenta	Placenta
48	chr9:7103200-7105000	Strong transcription	Fetal Intestine Small	intestine
49	chr9:7103200-7105400	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr9:7103200-7105800	Strong transcription	Stomach Smooth Muscle	stomach

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