Variant report

Variant	rs34027321
Chromosome Location	chr1:211448871-211448872
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:211432881..211436837-chr1:211447247..211451397,4	K562	blood:
2	chr1:211445921..211449988-chr1:211451862..211456594,5	K562	blood:
3	chr1:211430511..211432103-chr1:211446365..211449006,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000117625	Chromatin interaction

rs_ID	r²[population]
rs11119713	0.94[EUR][1000 genomes]
rs11803005	0.94[EUR][1000 genomes]
rs11806910	0.88[EUR][1000 genomes]
rs12723208	0.85[EUR][1000 genomes]
rs12729996	0.94[EUR][1000 genomes]
rs12743458	0.86[EUR][1000 genomes]
rs12752670	0.85[EUR][1000 genomes]
rs12754607	0.94[EUR][1000 genomes]
rs12754747	0.83[EUR][1000 genomes]
rs12756590	0.94[EUR][1000 genomes]
rs17188916	0.96[EUR][1000 genomes]
rs17188937	0.92[EUR][1000 genomes]
rs17267484	0.91[EUR][1000 genomes]
rs17267491	0.94[EUR][1000 genomes]
rs17267554	0.83[EUR][1000 genomes]
rs17267561	0.83[EUR][1000 genomes]
rs2280079	0.85[EUR][1000 genomes]
rs34140425	0.96[EUR][1000 genomes]
rs34251608	0.97[EUR][1000 genomes]
rs34256746	0.98[EUR][1000 genomes]
rs34813082	0.94[EUR][1000 genomes]
rs35228985	0.94[EUR][1000 genomes]
rs35711226	0.83[EUR][1000 genomes]
rs35791308	0.85[EUR][1000 genomes]
rs35995968	0.93[EUR][1000 genomes]
rs41275358	0.92[EUR][1000 genomes]
rs66526219	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6679980	0.98[EUR][1000 genomes]
rs6686281	0.84[EUR][1000 genomes]
rs67764962	0.94[EUR][1000 genomes]
rs67772854	0.85[EUR][1000 genomes]
rs71640006	0.98[EUR][1000 genomes]

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211434400-211453200	Weak transcription	Small Intestine	intestine
2	chr1:211434400-211453400	Weak transcription	Spleen	Spleen
3	chr1:211434400-211454800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:211434400-211487000	Weak transcription	Gastric	stomach
5	chr1:211434600-211449200	Weak transcription	Colonic Mucosa	Colon
6	chr1:211434600-211453400	Weak transcription	Aorta	Aorta
7	chr1:211434600-211454000	Weak transcription	Pancreas	Pancrea
8	chr1:211434600-211462600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr1:211434600-211478200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr1:211434800-211453000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr1:211434800-211453400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr1:211434800-211462600	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr1:211434800-211464800	Weak transcription	Right Ventricle	heart
14	chr1:211434800-211474200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr1:211435600-211460800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr1:211435800-211449000	Weak transcription	GM12878-XiMat	blood
17	chr1:211436200-211456800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr1:211437000-211454600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr1:211437800-211451000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr1:211438800-211478800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr1:211439800-211478200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr1:211440000-211458200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr1:211440600-211449200	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr1:211440600-211454400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr1:211440800-211481800	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr1:211440800-211483600	Strong transcription	Primary monocytes fromperipheralblood	blood
27	chr1:211441200-211461200	Strong transcription	Primary neutrophils fromperipheralblood	blood
28	chr1:211443000-211480000	Strong transcription	Dnd41	blood
29	chr1:211443000-211480400	Strong transcription	Placenta	Placenta
30	chr1:211443200-211460800	Strong transcription	Rectal Mucosa Donor 29	rectum
31	chr1:211443200-211484000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr1:211443600-211454400	Strong transcription	HUES64 Cell Line	embryonic stem cell
33	chr1:211443800-211460400	Strong transcription	Primary B cells from peripheral blood	blood
34	chr1:211443800-211478200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr1:211444200-211459400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr1:211444400-211454000	Strong transcription	Skeletal Muscle Female	skeletal muscle
37	chr1:211444400-211479000	Strong transcription	Liver	Liver
38	chr1:211444600-211449000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr1:211444600-211454400	Strong transcription	HUES48 Cell Line	embryonic stem cell
40	chr1:211444600-211454400	Strong transcription	HUES6 Cell Line	embryonic stem cell
41	chr1:211444600-211457000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
42	chr1:211444600-211457200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr1:211444600-211459000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
44	chr1:211444600-211459800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr1:211444600-211471000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
46	chr1:211444600-211478000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr1:211444600-211479200	Strong transcription	Primary T cells fromperipheralblood	blood
48	chr1:211444800-211449800	Strong transcription	A549	lung
49	chr1:211444800-211449800	Strong transcription	Osteobl	bone
50	chr1:211444800-211450200	Strong transcription	H1 Cell Line	embryonic stem cell

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