Variant report

Variant	rs34029395
Chromosome Location	chr1:152268642-152268643
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11204976	0.83[ASN][1000 genomes]
rs11485508	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11584340	0.80[ASN][1000 genomes]
rs12027807	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12027899	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12045492	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12045496	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12065368	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12730241	0.83[ASN][1000 genomes]
rs12733350	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1858480	0.82[ASN][1000 genomes]
rs2184950	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2184951	0.83[ASN][1000 genomes]
rs2184953	0.81[ASN][1000 genomes]
rs3120642	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3120659	0.82[ASN][1000 genomes]
rs3120661	0.82[ASN][1000 genomes]
rs3126054	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3126055	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3126056	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3126058	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3126060	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3126062	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs3126066	0.80[ASN][1000 genomes]
rs3126067	0.80[ASN][1000 genomes]
rs3126072	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3126074	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3126079	0.81[ASN][1000 genomes]
rs3126091	0.82[ASN][1000 genomes]
rs3126094	0.82[ASN][1000 genomes]
rs3126097	0.82[ASN][1000 genomes]
rs41267154	0.80[ASN][1000 genomes]
rs4567282	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs57672167	0.82[AMR][1000 genomes]
rs6681433	0.80[ASN][1000 genomes]
rs9435974	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs9436062	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014095	chr1:152104486-152454591	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1005472	chr1:152247763-152443448	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv535161	chr1:152247763-152443448	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	esv3357297	chr1:152266328-152270926	Weak transcription	n/a	n/a	inside rSNPs	diseases
5	esv3323815	chr1:152267528-152272226	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:152264200-152275400	Weak transcription	Ovary	ovary

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