Variant report

Variant	rs34043696
Chromosome Location	chr8:10525925-10525926
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr8:10525636-10526251	HUVEC	blood vessel:	n/a	n/a
2	GATA2	chr8:10525348-10526361	HUVEC	blood vessel:	n/a	n/a
3	FOS	chr8:10525844-10526014	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:10525060..10527133-chr8:10530588..10533348,2	K562	blood:

Variant related genes	Relation type
C8orf74	TF binding region
ENSG00000171060	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10094634	0.99[EUR][1000 genomes]
rs10094968	0.87[ASN][1000 genomes]
rs10097577	0.87[ASN][1000 genomes]
rs10098956	0.80[ASN][1000 genomes]
rs10102073	0.99[EUR][1000 genomes]
rs10107820	0.87[ASN][1000 genomes]
rs10216539	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11250057	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11778725	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11990311	0.87[ASN][1000 genomes]
rs12543900	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12543903	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13281534	0.86[EUR][1000 genomes]
rs28375521	0.93[EUR][1000 genomes]
rs28463918	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28468400	0.81[EUR][1000 genomes]
rs28488675	0.81[ASN][1000 genomes]
rs28521236	0.81[EUR][1000 genomes]
rs28665435	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28754712	0.93[EUR][1000 genomes]
rs35639780	0.80[ASN][1000 genomes]
rs4129653	0.89[EUR][1000 genomes]
rs4840504	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55782357	0.99[EUR][1000 genomes]
rs55829418	0.99[EUR][1000 genomes]
rs59276210	0.80[ASN][1000 genomes]
rs59329830	0.80[ASN][1000 genomes]
rs60672851	0.80[ASN][1000 genomes]
rs6601505	0.80[ASN][1000 genomes]
rs6601507	0.80[ASN][1000 genomes]
rs6601508	0.80[ASN][1000 genomes]
rs6991320	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7002378	0.93[ASN][1000 genomes]
rs7003456	0.93[ASN][1000 genomes]
rs7006325	0.87[ASN][1000 genomes]
rs73200714	0.88[EUR][1000 genomes]
rs73530796	0.87[ASN][1000 genomes]
rs73532605	0.87[ASN][1000 genomes]
rs73532619	0.80[ASN][1000 genomes]
rs73532620	0.80[ASN][1000 genomes]
rs73532622	0.80[ASN][1000 genomes]
rs73541440	0.93[ASN][1000 genomes]
rs73541442	0.93[ASN][1000 genomes]
rs73541445	0.93[ASN][1000 genomes]
rs73541496	0.81[ASN][1000 genomes]
rs7813417	0.94[EUR][1000 genomes]
rs7815184	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7824878	0.94[EUR][1000 genomes]
rs7828426	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030934	chr8:10065169-10561161	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv1022994	chr8:10190618-10660122	Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv539466	chr8:10190618-10660122	Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv1025557	chr8:10216726-10555187	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv917085	chr8:10237508-10828204	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
6	nsv610267	chr8:10268736-10526742	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
7	nsv1015932	chr8:10357101-10597856	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
8	nsv1021048	chr8:10504395-10591896	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10520800-10529000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:10524800-10529600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:10525200-10526400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr8:10525600-10526200	Enhancers	Primary hematopoietic stem cells	blood
5	chr8:10525600-10526200	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr8:10525600-10526400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr8:10525600-10526400	Enhancers	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links