Variant report

Variant	rs34044129
Chromosome Location	chr4:130054723-130054724
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10518543	0.88[EUR][1000 genomes]
rs12643279	0.88[EUR][1000 genomes]
rs12648004	0.88[EUR][1000 genomes]
rs12651152	0.96[EUR][1000 genomes]
rs13101732	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs13106626	0.87[AMR][1000 genomes]
rs13111663	0.92[EUR][1000 genomes]
rs13124870	0.87[AMR][1000 genomes]
rs13126896	0.80[EUR][1000 genomes]
rs13127992	0.88[EUR][1000 genomes]
rs13136209	0.84[EUR][1000 genomes]
rs13138537	0.88[EUR][1000 genomes]
rs17184802	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2068135	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2068136	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34483420	0.84[EUR][1000 genomes]
rs35002630	0.80[EUR][1000 genomes]
rs35053690	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35128288	0.84[EUR][1000 genomes]
rs35259423	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35349408	0.84[EUR][1000 genomes]
rs35388412	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35879843	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs36000518	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs36101862	0.84[EUR][1000 genomes]
rs36124477	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs71612197	0.80[EUR][1000 genomes]
rs71612199	0.84[EUR][1000 genomes]
rs71613908	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs71613914	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869258	chr4:129191619-130138148	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv534538	chr4:129799138-130431688	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv879931	chr4:129939775-130178102	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv32790	chr4:130053635-130058173	Enhancers ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:130054200-130055200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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