Variant report

Variant	rs34051124
Chromosome Location	chr8:63557372-63557373
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11984714	0.95[AFR][1000 genomes]
rs11986586	0.95[AFR][1000 genomes]
rs11986711	0.95[AFR][1000 genomes]
rs11991931	0.95[AFR][1000 genomes]
rs11993685	0.95[AFR][1000 genomes]
rs11993778	0.95[AFR][1000 genomes]
rs55665921	0.95[AFR][1000 genomes]
rs56055262	0.95[AFR][1000 genomes]
rs56095987	0.89[AFR][1000 genomes]
rs58151304	1.00[EUR][1000 genomes]
rs73683354	0.89[AFR][1000 genomes]
rs73683359	0.95[AFR][1000 genomes]
rs73683361	0.95[AFR][1000 genomes]
rs73685416	0.95[AFR][1000 genomes]
rs73685417	0.95[AFR][1000 genomes]
rs73685418	0.89[AFR][1000 genomes]
rs73685424	0.89[AFR][1000 genomes]
rs73685426	0.89[AFR][1000 genomes]
rs73685427	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv831340	chr8:63515126-63702660	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv890960	chr8:63516962-63629549	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63550600-63557400	Weak transcription	Fetal Lung	lung
2	chr8:63554400-63557400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr8:63555000-63557400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr8:63555400-63558200	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr8:63556000-63558000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr8:63556400-63557600	Enhancers	Brain Germinal Matrix	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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