Variant report

Variant	rs340603
Chromosome Location	chr2:21022089-21022090
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:20850782..20852679-chr2:21021448..21023947,2	K562	blood:
2	chr2:21021863..21023971-chr2:97534039..97536647,2	MCF-7	breast:
3	chr2:20550750..20552615-chr2:21021758..21023805,2	K562	blood:
4	chr15:52859630..52861792-chr2:21021008..21023718,2	MCF-7	breast:
5	chr2:21021759..21024284-chr2:21059514..21062334,2	MCF-7	breast:
6	chr2:20994978..20997045-chr2:21020734..21022749,2	K562	blood:
7	chr2:21021794..21022334-chr9:128003432..128004294,2	Hela-S3	cervix:
8	chr2:20553036..20555309-chr2:21020299..21023238,2	K562	blood:
9	chr2:21020884..21022716-chr2:21040300..21043196,2	K562	blood:
10	chr2:21020725..21022503-chr2:21444417..21447318,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000055917	Chromatin interaction
ENSG00000044574	Chromatin interaction
ENSG00000128989	Chromatin interaction
ENSG00000239705	Chromatin interaction
ENSG00000168758	Chromatin interaction
ENSG00000118960	Chromatin interaction
ENSG00000252216	Chromatin interaction
ENSG00000236436	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12468102	0.92[EUR][1000 genomes]
rs12469525	0.92[EUR][1000 genomes]
rs12476001	0.96[EUR][1000 genomes]
rs16982023	0.92[EUR][1000 genomes]
rs16982026	0.96[EUR][1000 genomes]
rs16988072	0.96[EUR][1000 genomes]
rs16988079	0.96[EUR][1000 genomes]
rs17390286	0.92[EUR][1000 genomes]
rs340601	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs340602	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs340604	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs340606	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs340607	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs340615	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs472692	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs490710	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs492399	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4971527	0.96[EUR][1000 genomes]
rs4971529	0.96[EUR][1000 genomes]
rs518968	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs519025	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs575246	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57864736	0.87[AMR][1000 genomes]
rs597781	0.96[EUR][1000 genomes]
rs645100	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs645150	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs649018	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs666471	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs685246	0.96[EUR][1000 genomes]
rs7600933	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs839915	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21019000-21022200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr2:21019000-21022200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr2:21019400-21022200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr2:21021400-21022200	Active TSS	HepG2	liver
5	chr2:21021400-21023400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr2:21021400-21023400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr2:21021400-21023400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr2:21021600-21022200	Active TSS	Primary T helper cells fromperipheralblood	blood
9	chr2:21021600-21022200	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
10	chr2:21021600-21022200	Active TSS	Skeletal Muscle Female	skeletal muscle
11	chr2:21021600-21022400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
12	chr2:21021600-21022400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr2:21021600-21022400	Active TSS	Brain Germinal Matrix	brain
14	chr2:21021600-21023000	Active TSS	Primary hematopoietic stem cells	blood
15	chr2:21021600-21023000	Active TSS	HSMM	muscle
16	chr2:21021600-21023200	Active TSS	iPS-18 Cell Line	embryonic stem cell
17	chr2:21021600-21023200	Active TSS	Primary T helper cells PMA-I stimulated	--
18	chr2:21021600-21023200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr2:21021600-21023200	Active TSS	Muscle Satellite Cultured Cells	--
20	chr2:21021600-21023200	Active TSS	Aorta	Aorta
21	chr2:21021600-21023200	Active TSS	Fetal Stomach	stomach
22	chr2:21021600-21023200	Active TSS	Sigmoid Colon	Sigmoid Colon
23	chr2:21021600-21023200	Active TSS	Small Intestine	intestine
24	chr2:21021600-21023200	Active TSS	Dnd41	blood
25	chr2:21021600-21023200	Active TSS	HMEC	breast
26	chr2:21021600-21023200	Active TSS	HSMMtube	muscle
27	chr2:21021600-21023200	Active TSS	HUVEC	blood vessel
28	chr2:21021600-21023200	Active TSS	NH-A	brain
29	chr2:21021600-21023200	Active TSS	NHEK	skin
30	chr2:21021600-21023200	Active TSS	Osteobl	bone
31	chr2:21021600-21023400	Active TSS	ES-I3 Cell Line	embryonic stem cell
32	chr2:21021600-21023400	Active TSS	H1 Cell Line	embryonic stem cell
33	chr2:21021600-21023400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr2:21021600-21023400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr2:21021600-21023400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr2:21021600-21023400	Active TSS	HUES48 Cell Line	embryonic stem cell
37	chr2:21021600-21023400	Active TSS	HUES6 Cell Line	embryonic stem cell
38	chr2:21021600-21023400	Active TSS	HUES64 Cell Line	embryonic stem cell
39	chr2:21021600-21023400	Active TSS	iPS-15b Cell Line	embryonic stem cell
40	chr2:21021600-21023400	Active TSS	iPS-20b Cell Line	embryonic stem cell
41	chr2:21021600-21023400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr2:21021600-21023400	Active TSS	Primary hematopoietic stem cells short term culture	blood
43	chr2:21021600-21023400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr2:21021600-21023400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr2:21021600-21023400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr2:21021600-21023400	Active TSS	Liver	Liver
47	chr2:21021600-21023400	Active TSS	Brain Angular Gyrus	brain
48	chr2:21021600-21023400	Active TSS	Colonic Mucosa	Colon
49	chr2:21021600-21023400	Active TSS	Duodenum Mucosa	Duodenum
50	chr2:21021600-21023400	Active TSS	Duodenum Smooth Muscle	Duodenum

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