Variant report

Variant	rs340608
Chromosome Location	chr2:21023897-21023898
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr2:21023820-21023970	GM12872	blood:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:20850782..20852679-chr2:21021448..21023947,2	K562	blood:
2	chr2:21021863..21023971-chr2:97534039..97536647,2	MCF-7	breast:
3	chr2:21004442..21007012-chr2:21022957..21025517,2	MCF-7	breast:
4	chr2:21021759..21024284-chr2:21059514..21062334,2	MCF-7	breast:
5	chr2:21023404..21026018-chr2:21030811..21034294,3	MCF-7	breast:
6	chr2:20960384..20962509-chr2:21023196..21025705,2	K562	blood:

No data

Variant related genes	Relation type
C2orf43	TF binding region
ENSG00000236436	Chromatin interaction
ENSG00000168758	Chromatin interaction
ENSG00000118960	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10176721	1.00[EUR][1000 genomes]
rs10200826	1.00[EUR][1000 genomes]
rs11893093	1.00[EUR][1000 genomes]
rs12713675	1.00[EUR][1000 genomes]
rs12720770	1.00[EUR][1000 genomes]
rs12720812	1.00[EUR][1000 genomes]
rs12720813	1.00[EUR][1000 genomes]
rs12720852	1.00[EUR][1000 genomes]
rs12720855	1.00[EUR][1000 genomes]
rs1437408	1.00[EUR][1000 genomes]
rs16988071	1.00[EUR][1000 genomes]
rs1866043	1.00[EUR][1000 genomes]
rs340605	1.00[EUR][1000 genomes]
rs340614	1.00[EUR][1000 genomes]
rs548324	0.92[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs553687	0.91[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs571566	1.00[EUR][1000 genomes]
rs57494499	1.00[EUR][1000 genomes]
rs582107	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58696000	1.00[EUR][1000 genomes]
rs59882809	1.00[EUR][1000 genomes]
rs59995050	1.00[EUR][1000 genomes]
rs61072469	1.00[EUR][1000 genomes]
rs61478003	1.00[EUR][1000 genomes]
rs61743299	1.00[EUR][1000 genomes]
rs642152	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs648568	1.00[EUR][1000 genomes]
rs662193	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6736533	1.00[EUR][1000 genomes]
rs6759981	1.00[EUR][1000 genomes]
rs72654435	1.00[EUR][1000 genomes]
rs72888848	1.00[EUR][1000 genomes]
rs72888854	1.00[EUR][1000 genomes]
rs72888855	1.00[EUR][1000 genomes]
rs72888859	1.00[EUR][1000 genomes]
rs72890734	1.00[EUR][1000 genomes]
rs72890747	1.00[EUR][1000 genomes]
rs72890758	1.00[EUR][1000 genomes]
rs72890763	1.00[EUR][1000 genomes]
rs72890771	1.00[EUR][1000 genomes]
rs72890775	1.00[EUR][1000 genomes]
rs72890778	1.00[EUR][1000 genomes]
rs72890781	1.00[EUR][1000 genomes]
rs72890784	1.00[EUR][1000 genomes]
rs72890789	1.00[EUR][1000 genomes]
rs72890791	1.00[EUR][1000 genomes]
rs72902534	1.00[EUR][1000 genomes]
rs72902535	1.00[EUR][1000 genomes]
rs72902538	1.00[EUR][1000 genomes]
rs72902540	1.00[EUR][1000 genomes]
rs72902541	1.00[EUR][1000 genomes]
rs72902542	1.00[EUR][1000 genomes]
rs72902544	1.00[EUR][1000 genomes]
rs72902548	1.00[EUR][1000 genomes]
rs73224614	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73226544	1.00[EUR][1000 genomes]
rs73226553	1.00[EUR][1000 genomes]
rs73226559	1.00[EUR][1000 genomes]
rs73235072	1.00[EUR][1000 genomes]
rs73235079	1.00[EUR][1000 genomes]
rs73235100	1.00[EUR][1000 genomes]
rs73237114	1.00[EUR][1000 genomes]
rs73237135	1.00[EUR][1000 genomes]
rs73237147	1.00[EUR][1000 genomes]
rs839914	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21023200-21024000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:21023400-21024000	Enhancers	Primary T cells fromperipheralblood	blood
3	chr2:21023400-21024000	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr2:21023400-21024000	Enhancers	HMEC	breast
5	chr2:21023400-21024000	Weak transcription	K562	blood
6	chr2:21023400-21024200	Enhancers	NHEK	skin
7	chr2:21023400-21024400	Enhancers	HSMMtube	muscle
8	chr2:21023800-21024000	Weak transcription	Placenta	Placenta
9	chr2:21023800-21024200	Enhancers	Hela-S3	cervix

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