Variant report

Variant	rs34067571
Chromosome Location	chr1:160846934-160846935
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10908808	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11265510	0.80[AMR][1000 genomes]
rs11265514	0.81[AFR][1000 genomes]
rs11578752	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12041508	0.86[AMR][1000 genomes]
rs12409609	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1333062	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17387157	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1855187	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2039415	0.87[EUR][1000 genomes]
rs2151293	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs2184067	0.90[AMR][1000 genomes]
rs2184069	0.90[AMR][1000 genomes]
rs2236515	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2274905	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2274907	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2274908	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2274909	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2274910	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2297559	0.87[EUR][1000 genomes]
rs3766356	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3766357	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3766359	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3818724	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3820094	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4017448	0.90[AMR][1000 genomes]
rs4017458	0.89[AMR][1000 genomes]
rs4017460	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs4656944	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs4656945	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs4656950	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs4656951	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4656953	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4656955	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4656956	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4656957	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4656958	0.86[EUR][1000 genomes]
rs4656959	0.93[ASN][1000 genomes]
rs6427550	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6427551	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6427552	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6427553	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6658416	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6667400	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6671490	0.87[EUR][1000 genomes]
rs6676174	0.90[AMR][1000 genomes]
rs6685693	0.91[AMR][1000 genomes]
rs6694415	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6699162	0.91[AMR][1000 genomes]
rs6699166	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs6700146	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs6703406	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6704490	0.83[AMR][1000 genomes]
rs7411035	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7414728	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7414826	0.81[AFR][1000 genomes]
rs7524351	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7532133	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7551697	0.83[AFR][1000 genomes]
rs869168	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs952804	0.90[AMR][1000 genomes]
rs959047	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464161	chr1:160747615-160852046	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv548057	chr1:160747615-160852046	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv530077	chr1:160836448-161284904	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160832600-160847400	Weak transcription	Spleen	Spleen
2	chr1:160834600-160849000	Weak transcription	Ovary	ovary
3	chr1:160844400-160847600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr1:160845400-160847200	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr1:160846000-160847200	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr1:160846000-160847400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr1:160846000-160847400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr1:160846000-160847400	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr1:160846400-160847600	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr1:160846400-160847600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr1:160846600-160847200	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr1:160846600-160847400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr1:160846600-160847400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
14	chr1:160846600-160847600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr1:160846600-160847600	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr1:160846600-160847800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr1:160846600-160849400	Enhancers	Primary T cells fromperipheralblood	blood
18	chr1:160846800-160847200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr1:160846800-160847600	Enhancers	Primary T helper cells PMA-I stimulated	--
20	chr1:160846800-160854200	Weak transcription	Fetal Intestine Small	intestine

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