Variant report

Variant	rs34089631
Chromosome Location	chr7:122309039-122309040
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10046586	0.91[AMR][1000 genomes]
rs10256337	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10265175	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10268190	0.91[AMR][1000 genomes]
rs10268368	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12706427	1.00[EUR][1000 genomes]
rs12706434	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13221540	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13222266	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13223497	0.91[AMR][1000 genomes]
rs13224171	0.91[AMR][1000 genomes]
rs13226270	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13226382	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13230792	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13237142	0.91[AMR][1000 genomes]
rs13239569	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13247906	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2159825	0.91[AMR][1000 genomes]
rs28403443	0.91[AMR][1000 genomes]
rs28449483	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28459977	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28550991	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28635203	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34125908	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34148286	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34182275	1.00[AFR][1000 genomes]
rs34731459	1.00[AFR][1000 genomes]
rs34927994	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35127684	1.00[AFR][1000 genomes]
rs35186619	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35628062	1.00[EUR][1000 genomes]
rs35986281	0.97[EUR][1000 genomes]
rs36199141	1.00[AMR][1000 genomes]
rs4283984	0.91[AMR][1000 genomes]
rs6466830	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71574711	1.00[EUR][1000 genomes]
rs71574712	1.00[EUR][1000 genomes]
rs71574713	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71574714	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs71574716	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs71574717	1.00[AMR][1000 genomes]
rs7779064	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7789775	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv532178	chr7:122203056-122978846	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv532179	chr7:122249639-122986259	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv532181	chr7:122291571-122684719	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122293600-122318600	Weak transcription	Lung	lung
2	chr7:122294000-122314400	Weak transcription	Fetal Lung	lung
3	chr7:122301400-122315200	Weak transcription	Gastric	stomach
4	chr7:122305400-122312600	Weak transcription	Pancreas	Pancrea
5	chr7:122307000-122313800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr7:122308000-122311400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr7:122308200-122311400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr7:122308200-122311600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr7:122308200-122316600	Weak transcription	Left Ventricle	heart
10	chr7:122308400-122314400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr7:122309000-122314200	Weak transcription	Placenta Amnion	Placenta Amnion

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