Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:24092580..24094161-chr20:24096209..24099117,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1160365	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34016617	0.87[EUR][1000 genomes]
rs34097439	0.87[EUR][1000 genomes]
rs34123386	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35671594	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35675087	0.87[EUR][1000 genomes]
rs6036634	0.81[EUR][1000 genomes]
rs6036639	0.87[EUR][1000 genomes]
rs6036641	0.87[EUR][1000 genomes]
rs6036647	0.87[EUR][1000 genomes]
rs6049376	0.84[EUR][1000 genomes]
rs6049384	0.87[EUR][1000 genomes]
rs6049387	0.87[EUR][1000 genomes]
rs6049388	0.87[EUR][1000 genomes]
rs6049395	0.87[EUR][1000 genomes]
rs6132697	0.87[EUR][1000 genomes]
rs6132698	0.87[EUR][1000 genomes]
rs6132699	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6132702	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6138198	0.84[EUR][1000 genomes]
rs6138199	0.87[EUR][1000 genomes]
rs6138206	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6138211	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6138213	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62193667	0.87[EUR][1000 genomes]
rs74173629	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1056491	chr20:23955040-24105080	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3328348	chr20:24095746-24285830	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24094400-24098400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:24095000-24098200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr20:24096400-24098000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr20:24096400-24098200	Weak transcription	HUVEC	blood vessel
5	chr20:24096600-24097800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr20:24097000-24098200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr20:24097000-24100000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
8	chr20:24097200-24098000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
9	chr20:24097200-24099200	Bivalent Enhancer	Fetal Stomach	stomach
10	chr20:24097200-24100000	Enhancers	Fetal Muscle Leg	muscle

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