Variant report

Variant	rs341401
Chromosome Location	chr15:61132845-61132846
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11071561	0.80[CHB][hapmap]
rs12910376	0.89[CEU][hapmap];0.84[CHB][hapmap];0.82[EUR][1000 genomes]
rs341398	0.81[JPT][hapmap]
rs3959689	0.85[CHB][hapmap]
rs4775301	0.89[CEU][hapmap];0.90[CHB][hapmap];0.82[EUR][1000 genomes]
rs8023252	0.80[CHB][hapmap]
rs8024133	0.80[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049839	chr15:61095001-61275125	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:61115800-61133600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr15:61123200-61142000	Weak transcription	Fetal Stomach	stomach
3	chr15:61123600-61145200	Weak transcription	Right Ventricle	heart
4	chr15:61126800-61141600	Weak transcription	Stomach Smooth Muscle	stomach
5	chr15:61127400-61134800	Weak transcription	Psoas Muscle	Psoas
6	chr15:61129200-61134200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr15:61129200-61143400	Weak transcription	Ovary	ovary
8	chr15:61130800-61134000	Weak transcription	GM12878-XiMat	blood
9	chr15:61130800-61147200	Weak transcription	Left Ventricle	heart
10	chr15:61131600-61134200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
11	chr15:61131600-61134600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
12	chr15:61131600-61135400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
13	chr15:61131800-61133200	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr15:61131800-61133400	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr15:61131800-61134000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
16	chr15:61131800-61134200	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr15:61131800-61134600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
18	chr15:61131800-61135000	Enhancers	Fetal Muscle Leg	muscle
19	chr15:61131800-61135200	Flanking Active TSS	Primary T cells from cord blood	blood
20	chr15:61132000-61134800	Weak transcription	Right Atrium	heart
21	chr15:61132200-61133400	Bivalent Enhancer	Thymus	Thymus
22	chr15:61132200-61133600	Enhancers	HSMM	muscle
23	chr15:61132200-61133800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr15:61132200-61134000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
25	chr15:61132200-61134000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
26	chr15:61132200-61135400	Enhancers	Fetal Muscle Trunk	muscle
27	chr15:61132400-61133000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr15:61132400-61133000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr15:61132400-61133000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr15:61132400-61133200	Enhancers	HUES64 Cell Line	embryonic stem cell
31	chr15:61132400-61133400	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr15:61132400-61133600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
33	chr15:61132400-61133600	Enhancers	Muscle Satellite Cultured Cells	--
34	chr15:61132400-61134800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
35	chr15:61132400-61135200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
36	chr15:61132400-61136400	Bivalent Enhancer	Fetal Thymus	thymus
37	chr15:61132600-61133400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr15:61132600-61133600	Enhancers	Brain Hippocampus Middle	brain
39	chr15:61132600-61134000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
40	chr15:61132600-61134800	Weak transcription	Esophagus	oesophagus
41	chr15:61132600-61135000	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr15:61132600-61135000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
43	chr15:61132800-61133200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr15:61132800-61133200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
45	chr15:61132800-61133200	Enhancers	Brain Inferior Temporal Lobe	brain
46	chr15:61132800-61133200	Enhancers	NHDF-Ad	bronchial
47	chr15:61132800-61133600	Enhancers	Lung	lung
48	chr15:61132800-61133800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
49	chr15:61132800-61134000	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
50	chr15:61132800-61134200	Bivalent Enhancer	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links