Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10157295	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10429908	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10733081	0.81[EUR][1000 genomes]
rs10921484	0.92[ASN][1000 genomes]
rs10921488	0.85[ASN][1000 genomes]
rs10921489	0.90[ASN][1000 genomes]
rs10921490	0.81[ASN][1000 genomes]
rs10921492	0.84[ASN][1000 genomes]
rs12028846	0.86[ASN][1000 genomes]
rs12073039	0.86[ASN][1000 genomes]
rs12750617	0.93[ASN][1000 genomes]
rs12755187	0.88[ASN][1000 genomes]
rs1323088	0.97[ASN][1000 genomes]
rs1323089	0.97[ASN][1000 genomes]
rs13374626	0.88[ASN][1000 genomes]
rs1442422	0.99[ASN][1000 genomes]
rs4657898	0.96[ASN][1000 genomes]
rs4657899	0.96[ASN][1000 genomes]
rs4657901	0.83[ASN][1000 genomes]
rs527848	0.83[EUR][1000 genomes]
rs632531	0.83[EUR][1000 genomes]
rs6672135	0.82[EUR][1000 genomes]
rs9943099	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008266	chr1:193550185-194481053	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv872834	chr1:193889533-194482304	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv872835	chr1:194014041-194051568	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv467016	chr1:194022818-194037890	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv548665	chr1:194022818-194037890	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:194020400-194030800	Enhancers	Primary T helper cells fromperipheralblood	blood
2	chr1:194020800-194030800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr1:194022200-194030600	Enhancers	Primary T cells from cord blood	blood
4	chr1:194022200-194030800	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr1:194022400-194030800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr1:194024600-194030600	Enhancers	Primary T killer memory cells from peripheral blood	blood
7	chr1:194026200-194031000	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr1:194026200-194031600	Weak transcription	Right Atrium	heart
9	chr1:194027200-194030600	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr1:194028800-194030800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr1:194029200-194030400	Enhancers	Primary hematopoietic stem cells	blood
12	chr1:194029200-194030800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr1:194029400-194030600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr1:194029600-194030400	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr1:194029600-194030600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
16	chr1:194030000-194030800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr1:194030200-194031200	Weak transcription	HUVEC	blood vessel

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