Variant report

Variant	rs34180096
Chromosome Location	chr7:104608592-104608593
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr7:104607903-104608620	SK-N-SH	brain:	n/a	chr7:104608394-104608401 chr7:104608394-104608401 chr7:104608394-104608401 chr7:104608390-104608406 chr7:104608393-104608403 chr7:104608395-104608412
2	TCF12	chr7:104607899-104608621	SK-N-SH	brain:	n/a	n/a
3	TEAD4	chr7:104607929-104608630	SK-N-SH	brain:	n/a	chr7:104608289-104608298

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:104607959..104610771-chr7:104619164..104621413,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000251911	TF binding region

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs6948885	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029283	chr7:104571741-104729168	Strong transcription Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	132 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104584600-104619000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:104587200-104623600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr7:104598000-104619800	Weak transcription	Primary T cells from cord blood	blood
4	chr7:104598000-104621600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr7:104598200-104611600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr7:104598200-104620800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr7:104598200-104621400	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr7:104598200-104623000	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr7:104599000-104617200	Weak transcription	Gastric	stomach
10	chr7:104601800-104622800	Weak transcription	Thymus	Thymus
11	chr7:104602600-104614400	Weak transcription	Placenta	Placenta
12	chr7:104602800-104608600	Enhancers	K562	blood
13	chr7:104603200-104612200	Weak transcription	Colonic Mucosa	Colon
14	chr7:104604200-104610200	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr7:104604600-104609200	Weak transcription	Adipose Nuclei	Adipose
16	chr7:104604600-104620200	Weak transcription	Primary hematopoietic stem cells	blood
17	chr7:104604800-104611800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr7:104604800-104612200	Weak transcription	Esophagus	oesophagus
19	chr7:104604800-104612200	Weak transcription	Spleen	Spleen
20	chr7:104604800-104612400	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr7:104604800-104613200	Weak transcription	Left Ventricle	heart
22	chr7:104604800-104614000	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr7:104604800-104617200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr7:104605000-104616800	Weak transcription	Rectal Smooth Muscle	rectum
25	chr7:104605200-104609000	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr7:104605200-104614000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr7:104605400-104611800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr7:104605400-104611800	Weak transcription	HMEC	breast
29	chr7:104605400-104614400	Weak transcription	Fetal Kidney	kidney
30	chr7:104605600-104614000	Weak transcription	Fetal Stomach	stomach
31	chr7:104606600-104622000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr7:104607200-104608600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr7:104607200-104609400	Enhancers	NHDF-Ad	bronchial
34	chr7:104607200-104609800	Enhancers	Stomach Smooth Muscle	stomach
35	chr7:104607200-104615200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr7:104607400-104608600	Enhancers	Rectal Mucosa Donor 31	rectum
37	chr7:104607400-104609800	Enhancers	Osteobl	bone
38	chr7:104607400-104610000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr7:104607600-104609000	Enhancers	HSMM	muscle
40	chr7:104607600-104609200	Enhancers	Muscle Satellite Cultured Cells	--
41	chr7:104607600-104609400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr7:104607600-104609400	Enhancers	NHLF	lung
43	chr7:104607600-104609800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr7:104607800-104608800	Enhancers	Fetal Intestine Large	intestine
45	chr7:104607800-104608800	Enhancers	Fetal Intestine Small	intestine
46	chr7:104608000-104608600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr7:104608000-104609800	Enhancers	Colon Smooth Muscle	Colon
48	chr7:104608200-104609800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr7:104608200-104610400	Enhancers	Liver	Liver
50	chr7:104608200-104611800	Weak transcription	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links