Variant report

Variant	rs341814
Chromosome Location	chr8:49978803-49978804
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12056899	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1588532	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1628843	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2667280	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2667288	0.90[EUR][1000 genomes]
rs2667291	0.84[EUR][1000 genomes]
rs341803	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs341811	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62507216	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6472144	0.89[EUR][1000 genomes]
rs710894	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025068	chr8:49953397-50370208	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49974600-49979600	Enhancers	Adipose Nuclei	Adipose
2	chr8:49976600-49979400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr8:49977000-49979000	Enhancers	Primary hematopoietic stem cells	blood
4	chr8:49977200-49979200	Enhancers	K562	blood
5	chr8:49978200-49979000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr8:49978200-49979000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
7	chr8:49978200-49979400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr8:49978400-49979600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr8:49978400-49979600	Enhancers	Psoas Muscle	Psoas
10	chr8:49978600-49979000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr8:49978600-49979000	Flanking Active TSS	Hela-S3	cervix
12	chr8:49978800-49979400	Enhancers	Skeletal Muscle Female	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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