Variant report

Variant	rs34192103
Chromosome Location	chr13:111371604-111371605
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:111368227..111372332-chr13:111523767..111528470,4	MCF-7	breast:
2	chr13:111370419..111377483-chr13:111379803..111385146,6	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs55912497	1.00[AFR][1000 genomes]
rs74125078	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949634	chr13:111151460-111582996	Genic enhancers Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	245 gene(s)	inside rSNPs	diseases
2	nsv1044340	chr13:111234073-111692994	Bivalent Enhancer Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	240 gene(s)	inside rSNPs	diseases
3	nsv1048700	chr13:111265350-111658617	Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	240 gene(s)	inside rSNPs	diseases
4	nsv901014	chr13:111302922-111380684	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	197 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:111369200-111376000	Weak transcription	Colon Smooth Muscle	Colon
2	chr13:111369200-111376200	Weak transcription	HSMMtube	muscle
3	chr13:111369200-111381400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr13:111369800-111373800	Weak transcription	Brain Angular Gyrus	brain
5	chr13:111370000-111371800	Weak transcription	Primary B cells from peripheral blood	blood
6	chr13:111370000-111372000	Weak transcription	Primary T cells from cord blood	blood
7	chr13:111370000-111372000	Weak transcription	Primary hematopoietic stem cells	blood
8	chr13:111370200-111373600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr13:111370200-111379000	Weak transcription	HUVEC	blood vessel
10	chr13:111370200-111383400	Weak transcription	Right Atrium	heart
11	chr13:111370400-111371800	Weak transcription	Fetal Brain Female	brain
12	chr13:111370400-111371800	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr13:111370400-111374600	Weak transcription	HMEC	breast
14	chr13:111370400-111379400	Weak transcription	Fetal Kidney	kidney
15	chr13:111370600-111371800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr13:111370600-111371800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr13:111370600-111372000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr13:111370600-111372000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr13:111370600-111372000	Weak transcription	Osteobl	bone
20	chr13:111370800-111371800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr13:111370800-111371800	Weak transcription	Brain Substantia Nigra	brain
22	chr13:111370800-111371800	Weak transcription	NHDF-Ad	bronchial
23	chr13:111370800-111372000	Weak transcription	Primary B cells from cord blood	blood
24	chr13:111370800-111372000	Weak transcription	K562	blood
25	chr13:111370800-111372000	Weak transcription	NHEK	skin
26	chr13:111370800-111372200	Weak transcription	NH-A	brain
27	chr13:111370800-111374400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr13:111370800-111375400	Weak transcription	Brain Anterior Caudate	brain
29	chr13:111370800-111375600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr13:111370800-111375800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr13:111370800-111377800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr13:111370800-111378000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr13:111370800-111379200	Weak transcription	Psoas Muscle	Psoas
34	chr13:111370800-111380200	Weak transcription	HSMM	muscle
35	chr13:111370800-111380800	Weak transcription	Hela-S3	cervix
36	chr13:111371000-111371800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr13:111371000-111371800	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr13:111371000-111371800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr13:111371000-111377800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr13:111371000-111377800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr13:111371200-111371800	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr13:111371200-111372000	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
43	chr13:111371200-111372000	ZNF genes & repeats	Fetal Intestine Large	intestine
44	chr13:111371200-111372200	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr13:111371200-111372200	Genic enhancers	Gastric	stomach
46	chr13:111371200-111372200	ZNF genes & repeats	Thymus	Thymus
47	chr13:111371200-111372400	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr13:111371200-111372400	Strong transcription	Fetal Intestine Small	intestine
49	chr13:111371200-111372400	Genic enhancers	Spleen	Spleen
50	chr13:111371200-111372600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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