Variant report

Variant	rs34196474
Chromosome Location	chr6:64409983-64409984
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:64408853..64410358-chr6:64415666..64417276,2	K562	blood:
2	chr6:64347568..64349664-chr6:64406239..64409987,3	K562	blood:

Variant related genes	Relation type
ENSG00000118482	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs59091181	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73439221	1.00[AMR][1000 genomes]
rs73439253	1.00[AMR][1000 genomes]
rs73441048	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73449618	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73449632	1.00[AMR][1000 genomes]
rs73451349	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830674	chr6:64355412-64535801	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1022376	chr6:64386826-64445195	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64347000-64422400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:64354000-64421200	Weak transcription	Gastric	stomach
3	chr6:64370800-64413400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr6:64374200-64414600	Weak transcription	HMEC	breast
5	chr6:64384600-64414400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr6:64387200-64410200	Weak transcription	Colonic Mucosa	Colon
7	chr6:64387200-64421000	Weak transcription	Aorta	Aorta
8	chr6:64387400-64419400	Weak transcription	Fetal Heart	heart
9	chr6:64387600-64421000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr6:64387600-64423400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr6:64388000-64412800	Weak transcription	Lung	lung
12	chr6:64388200-64410200	Weak transcription	Fetal Brain Female	brain
13	chr6:64390000-64417600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr6:64391800-64410800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr6:64392200-64422400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:64392800-64425200	Weak transcription	NHEK	skin
17	chr6:64393200-64417600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr6:64393400-64423400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr6:64394600-64414000	Weak transcription	NHLF	lung
20	chr6:64394800-64413200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr6:64394800-64413200	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr6:64394800-64414000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr6:64395000-64413200	Weak transcription	NH-A	brain
24	chr6:64395000-64414000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr6:64395000-64414000	Weak transcription	Rectal Smooth Muscle	rectum
26	chr6:64395000-64414800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr6:64395200-64413600	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr6:64395400-64420200	Weak transcription	Fetal Brain Male	brain
29	chr6:64395600-64411800	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr6:64395800-64413600	Weak transcription	Brain Anterior Caudate	brain
31	chr6:64395800-64420200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr6:64396000-64413600	Weak transcription	HSMMtube	muscle
33	chr6:64396200-64411000	Weak transcription	K562	blood
34	chr6:64396200-64414000	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr6:64397400-64422400	Weak transcription	Pancreas	Pancrea
36	chr6:64397800-64410400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr6:64399200-64418600	Weak transcription	A549	lung
38	chr6:64401000-64426400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr6:64401800-64411400	Weak transcription	Brain Cingulate Gyrus	brain
40	chr6:64402000-64419200	Weak transcription	Brain Substantia Nigra	brain
41	chr6:64403400-64414000	Weak transcription	Esophagus	oesophagus
42	chr6:64404000-64424600	Strong transcription	Monocytes-CD14+_RO01746	blood
43	chr6:64404200-64417400	Strong transcription	Fetal Lung	lung
44	chr6:64404200-64423600	Strong transcription	Dnd41	blood
45	chr6:64404200-64423800	Strong transcription	Primary monocytes fromperipheralblood	blood
46	chr6:64404200-64424200	Strong transcription	HUES6 Cell Line	embryonic stem cell
47	chr6:64404200-64424600	Strong transcription	HUES48 Cell Line	embryonic stem cell
48	chr6:64404200-64424600	Strong transcription	HUES64 Cell Line	embryonic stem cell
49	chr6:64404200-64426600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr6:64404400-64417600	Strong transcription	HepG2	liver

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