Variant report

Variant	rs34205157
Chromosome Location	chr4:22875442-22875443
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10008649	0.87[EUR][1000 genomes]
rs11722687	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11734884	0.81[ASN][1000 genomes]
rs16873186	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35955585	0.94[ASN][1000 genomes]
rs3916046	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4697026	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60585272	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6840245	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349061	chr4:22379581-22887563	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1006697	chr4:22864883-22992212	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv829884	chr4:22865713-23031235	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1005822	chr4:22869022-23013619	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:22874800-22877200	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr4:22874800-22878800	Enhancers	Fetal Intestine Small	intestine
3	chr4:22874800-22879000	Enhancers	Fetal Intestine Large	intestine
4	chr4:22875000-22875600	Enhancers	Liver	Liver
5	chr4:22875400-22875600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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