Variant report

Variant	rs34212176
Chromosome Location	chr12:87362975-87362976
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 196 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:159)

rs_ID	r²[population]
rs10858556	0.89[EUR][1000 genomes]
rs11104222	0.89[EUR][1000 genomes]
rs11104241	0.89[EUR][1000 genomes]
rs11608450	0.89[EUR][1000 genomes]
rs11608474	0.89[EUR][1000 genomes]
rs11608968	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11609545	0.89[EUR][1000 genomes]
rs11609577	0.89[EUR][1000 genomes]
rs11609959	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11610000	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11610202	0.89[EUR][1000 genomes]
rs11610236	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11610240	0.89[EUR][1000 genomes]
rs11610610	0.89[EUR][1000 genomes]
rs11611298	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11611539	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11612996	0.89[EUR][1000 genomes]
rs11613608	0.89[EUR][1000 genomes]
rs11614902	0.89[EUR][1000 genomes]
rs11615280	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11615328	0.89[EUR][1000 genomes]
rs11615381	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12099694	0.89[EUR][1000 genomes]
rs12099773	0.89[EUR][1000 genomes]
rs12099774	0.89[EUR][1000 genomes]
rs12301215	0.89[EUR][1000 genomes]
rs17014343	0.89[EUR][1000 genomes]
rs17014345	0.89[EUR][1000 genomes]
rs17014347	0.89[EUR][1000 genomes]
rs17014352	0.89[EUR][1000 genomes]
rs17014355	0.89[EUR][1000 genomes]
rs17014357	0.89[EUR][1000 genomes]
rs17014359	0.89[EUR][1000 genomes]
rs17014361	0.89[EUR][1000 genomes]
rs17014363	0.89[EUR][1000 genomes]
rs17014366	0.89[EUR][1000 genomes]
rs17014369	0.89[EUR][1000 genomes]
rs17014430	0.89[EUR][1000 genomes]
rs28438801	1.00[EUR][1000 genomes]
rs35772317	0.89[EUR][1000 genomes]
rs55675470	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55676823	0.89[EUR][1000 genomes]
rs55768272	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55778807	0.89[EUR][1000 genomes]
rs55844216	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56337441	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56350179	0.89[EUR][1000 genomes]
rs58636507	0.84[EUR][1000 genomes]
rs59432611	1.00[EUR][1000 genomes]
rs60530487	0.89[EUR][1000 genomes]
rs60718562	0.89[EUR][1000 genomes]
rs61619114	1.00[EUR][1000 genomes]
rs66473769	1.00[EUR][1000 genomes]
rs66507120	0.89[EUR][1000 genomes]
rs66543122	0.89[EUR][1000 genomes]
rs66569903	0.89[EUR][1000 genomes]
rs66574092	0.89[EUR][1000 genomes]
rs66589206	0.89[EUR][1000 genomes]
rs66606466	0.89[EUR][1000 genomes]
rs66624731	0.89[EUR][1000 genomes]
rs66629114	1.00[EUR][1000 genomes]
rs66680519	1.00[EUR][1000 genomes]
rs66721237	0.89[EUR][1000 genomes]
rs66739429	0.89[EUR][1000 genomes]
rs66761801	0.89[EUR][1000 genomes]
rs66796553	0.89[EUR][1000 genomes]
rs66824103	1.00[EUR][1000 genomes]
rs66881017	0.89[EUR][1000 genomes]
rs66920061	0.89[EUR][1000 genomes]
rs66935924	0.89[EUR][1000 genomes]
rs66952248	0.89[EUR][1000 genomes]
rs66983270	0.89[EUR][1000 genomes]
rs66995551	0.89[EUR][1000 genomes]
rs67126124	0.89[EUR][1000 genomes]
rs67136611	0.89[EUR][1000 genomes]
rs67152262	0.89[EUR][1000 genomes]
rs67224165	1.00[EUR][1000 genomes]
rs67261476	0.89[EUR][1000 genomes]
rs67311221	0.89[EUR][1000 genomes]
rs67347619	1.00[EUR][1000 genomes]
rs67399263	0.89[EUR][1000 genomes]
rs67407309	0.89[EUR][1000 genomes]
rs67429282	0.89[EUR][1000 genomes]
rs67448624	0.89[EUR][1000 genomes]
rs67535999	0.89[EUR][1000 genomes]
rs67562061	0.89[EUR][1000 genomes]
rs67580367	0.86[EUR][1000 genomes]
rs67639118	0.89[EUR][1000 genomes]
rs67642342	0.89[EUR][1000 genomes]
rs67654202	1.00[EUR][1000 genomes]
rs67687334	0.89[EUR][1000 genomes]
rs67691941	0.89[EUR][1000 genomes]
rs67735893	0.89[EUR][1000 genomes]
rs67748606	0.81[EUR][1000 genomes]
rs67751006	0.89[EUR][1000 genomes]
rs67755243	0.89[EUR][1000 genomes]
rs67768352	0.89[EUR][1000 genomes]
rs67823383	0.89[EUR][1000 genomes]
rs67825879	1.00[EUR][1000 genomes]
rs67840505	0.89[EUR][1000 genomes]
rs67980276	0.89[EUR][1000 genomes]
rs67982985	0.89[EUR][1000 genomes]
rs68008015	0.89[EUR][1000 genomes]
rs68009363	0.89[EUR][1000 genomes]
rs68030146	0.89[EUR][1000 genomes]
rs68133325	0.89[EUR][1000 genomes]
rs68145579	0.81[EUR][1000 genomes]
rs71078956	0.89[EUR][1000 genomes]
rs7305593	0.89[EUR][1000 genomes]
rs73175412	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73175417	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73175427	1.00[EUR][1000 genomes]
rs73175466	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73175468	0.89[EUR][1000 genomes]
rs73175469	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73175473	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73175476	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73175480	0.89[EUR][1000 genomes]
rs73175482	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73175487	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73175494	0.89[EUR][1000 genomes]
rs73175495	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73175498	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73175502	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73177627	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73177634	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73177637	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73177701	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73179835	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73179837	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73179847	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73179849	0.89[EUR][1000 genomes]
rs73179855	0.89[EUR][1000 genomes]
rs73179857	0.81[EUR][1000 genomes]
rs73181416	0.89[EUR][1000 genomes]
rs73181421	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73181428	0.89[EUR][1000 genomes]
rs73181432	0.89[EUR][1000 genomes]
rs73181435	0.89[EUR][1000 genomes]
rs73181437	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73181441	0.81[EUR][1000 genomes]
rs73191081	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73192706	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73192712	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73192720	1.00[EUR][1000 genomes]
rs73192732	1.00[EUR][1000 genomes]
rs73192735	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73192741	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73192749	1.00[EUR][1000 genomes]
rs73192750	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73192753	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73192760	1.00[EUR][1000 genomes]
rs73192766	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73197878	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73197888	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73197891	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73197895	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73199707	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73199710	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:37 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754127	chr12:86723232-87576932	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv916862	chr12:86837694-87718558	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv899397	chr12:86863041-87636831	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv868879	chr12:87207243-87578373	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv559693	chr12:87216285-87447757	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1049688	chr12:87219949-87412043	Enhancers ZNF genes & repeats Active TSS Weak transcription Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1052693	chr12:87219949-87573582	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv899403	chr12:87225050-87528020	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	esv2753551	chr12:87226774-87473947	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv899405	chr12:87233995-87430209	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv899406	chr12:87233995-87528020	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv428596	chr12:87244257-87422246	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
13	nsv899407	chr12:87254691-87506910	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
14	esv2752961	chr12:87255339-87465826	ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
15	esv2754599	chr12:87255339-87491053	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
16	esv2755612	chr12:87260646-87460465	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
17	esv2755080	chr12:87260646-87465826	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
18	nsv559696	chr12:87274871-87374984	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
19	esv2754967	chr12:87281456-87491053	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
20	nsv519543	chr12:87307329-87528020	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
21	nsv1035280	chr12:87308897-87392547	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
22	nsv1039153	chr12:87309809-87386980	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
23	nsv1054726	chr12:87309809-87392547	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
24	nsv1036761	chr12:87314318-87386980	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
25	nsv1048586	chr12:87314318-87392547	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
26	nsv1051693	chr12:87314318-87394110	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
27	nsv517718	chr12:87319908-87430209	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
28	nsv899408	chr12:87319908-87490752	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
29	nsv899409	chr12:87319908-87506910	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
30	nsv899410	chr12:87319908-87528020	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
31	nsv1049167	chr12:87321296-87386980	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
32	nsv1050624	chr12:87321296-87396018	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
33	nsv1048789	chr12:87321296-87413371	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
34	nsv1046228	chr12:87323912-87386980	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
35	nsv899411	chr12:87339195-87459912	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
36	nsv899412	chr12:87346094-87506910	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
37	nsv1044248	chr12:87357657-87444309	Weak transcription ZNF genes & repeats Active TSS Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:87354400-87363000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr12:87362400-87363200	Weak transcription	HUES6 Cell Line	embryonic stem cell

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