Variant report

Variant	rs34227133
Chromosome Location	chr2:180537545-180537546
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10199992	0.83[ASN][1000 genomes]
rs1033213	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10497548	0.89[ASN][1000 genomes]
rs10803927	0.91[ASN][1000 genomes]
rs13035546	0.94[ASN][1000 genomes]
rs1515286	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1515291	0.83[ASN][1000 genomes]
rs17821260	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1877941	0.98[ASN][1000 genomes]
rs2037112	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2276573	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3106718	0.91[ASN][1000 genomes]
rs3106720	0.90[ASN][1000 genomes]
rs3112932	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3112935	0.90[ASN][1000 genomes]
rs62175185	0.83[ASN][1000 genomes]
rs62175186	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6718207	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7557247	0.88[ASN][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180535200-180540200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:180536200-180541600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr2:180536800-180539400	Weak transcription	Gastric	stomach
4	chr2:180536800-180541200	Weak transcription	HSMMtube	muscle
5	chr2:180537400-180542400	Weak transcription	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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