Variant report

Variant	rs34236012
Chromosome Location	chr20:24369002-24369003
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11697434	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11698416	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11698961	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11700348	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34578937	0.94[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs36008078	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs36102524	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74173638	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs74173639	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1058146	chr20:24210196-24531087	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv833946	chr20:24320375-24490702	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24360600-24370000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:24363800-24369800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr20:24364000-24369600	Weak transcription	Brain Substantia Nigra	brain
4	chr20:24364600-24370400	Weak transcription	Right Atrium	heart
5	chr20:24366800-24371600	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr20:24367000-24370000	Enhancers	Primary T cells from cord blood	blood
7	chr20:24367400-24371600	Enhancers	Fetal Thymus	thymus
8	chr20:24367800-24369200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr20:24368400-24371600	Enhancers	Thymus	Thymus
10	chr20:24368600-24369800	Enhancers	Dnd41	blood
11	chr20:24368600-24370000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr20:24368800-24371600	Enhancers	Primary T cells fromperipheralblood	blood
13	chr20:24369000-24369800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr20:24369000-24369800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr20:24369000-24371400	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr20:24369000-24371600	Enhancers	Primary T helper cells PMA-I stimulated	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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