Variant report
| Variant | rs34239525 |
|---|---|
| Chromosome Location | chr6:80784360-80784361 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:80784168..80786339-chr6:80787490..80789418,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000217377 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs11446289 | 1.00[AMR][1000 genomes] |
| rs13190687 | 1.00[AMR][1000 genomes] |
| rs13194041 | 1.00[AMR][1000 genomes] |
| rs13195312 | 1.00[AMR][1000 genomes] |
| rs13197924 | 1.00[AMR][1000 genomes] |
| rs13198886 | 1.00[AMR][1000 genomes] |
| rs13207785 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs13210539 | 1.00[AMR][1000 genomes] |
| rs13211239 | 1.00[AMR][1000 genomes] |
| rs13216126 | 1.00[AMR][1000 genomes] |
| rs13219055 | 1.00[AMR][1000 genomes] |
| rs2230513 | 1.00[AMR][1000 genomes] |
| rs34038612 | 1.00[AMR][1000 genomes] |
| rs34566095 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs34666876 | 1.00[AMR][1000 genomes] |
| rs35213475 | 1.00[AMR][1000 genomes] |
| rs35302124 | 1.00[AMR][1000 genomes] |
| rs36122081 | 1.00[AMR][1000 genomes] |
| rs71539129 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs71565063 | 1.00[AMR][1000 genomes] |
| rs71565064 | 1.00[AMR][1000 genomes] |
| rs71565065 | 1.00[AMR][1000 genomes] |
| rs71565067 | 1.00[AMR][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:80764800-80784400 | Weak transcription | Thymus | Thymus |
