Variant report

Variant	rs34242937
Chromosome Location	chr6:39016095-39016096
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12204558	0.84[AMR][1000 genomes]
rs910171	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1028088	chr6:38821047-39163549	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv538205	chr6:38821047-39163549	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv885821	chr6:38843970-39039503	Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv948357	chr6:38920998-39035836	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1027064	chr6:38984374-39034516	Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv1801734	chr6:38986164-39034484	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39009600-39016200	Weak transcription	Right Atrium	heart
2	chr6:39012200-39017800	Weak transcription	HMEC	breast
3	chr6:39015800-39016200	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:39015800-39016200	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
5	chr6:39015800-39016200	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
6	chr6:39015800-39016200	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:39015800-39016200	Bivalent Enhancer	Fetal Stomach	stomach
8	chr6:39015800-39017400	Enhancers	Fetal Heart	heart
9	chr6:39015800-39017600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
10	chr6:39015800-39017600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
11	chr6:39015800-39017600	Flanking Bivalent TSS/Enh	Dnd41	blood
12	chr6:39016000-39016200	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
13	chr6:39016000-39016200	Flanking Bivalent TSS/Enh	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:39016000-39016200	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
15	chr6:39016000-39016200	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
16	chr6:39016000-39016200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr6:39016000-39016200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr6:39016000-39016200	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr6:39016000-39016200	Bivalent Enhancer	Stomach Mucosa	stomach
20	chr6:39016000-39016400	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
21	chr6:39016000-39016400	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr6:39016000-39016400	Flanking Bivalent TSS/Enh	Breast Myoepithelial Primary Cells	Breast
23	chr6:39016000-39016400	Flanking Active TSS	Pancreas	Pancrea
24	chr6:39016000-39016400	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
25	chr6:39016000-39016600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr6:39016000-39016600	Active TSS	Right Ventricle	heart
27	chr6:39016000-39016800	Bivalent/Poised TSS	Primary T cells from cord blood	blood
28	chr6:39016000-39016800	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
29	chr6:39016000-39017000	Bivalent/Poised TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr6:39016000-39017000	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
31	chr6:39016000-39017000	Bivalent Enhancer	Fetal Muscle Leg	muscle
32	chr6:39016000-39017000	Enhancers	Spleen	Spleen
33	chr6:39016000-39017200	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr6:39016000-39017400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
35	chr6:39016000-39017600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
36	chr6:39016000-39020000	Active TSS	Pancreatic Islets	Pancreatic Islet

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