Variant report

Variant	rs34247954
Chromosome Location	chr7:101740993-101740994
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:101740784..101741600-chr7:101768361..101769008,2	MCF-7	breast:
2	chr7:101736386..101738941-chr7:101739075..101743072,3	MCF-7	breast:
3	chr7:101738827..101741081-chr7:101742643..101744286,2	MCF-7	breast:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10953358	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1637257	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs169307	0.97[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1734879	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201435	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs201436	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs201438	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs201440	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs201441	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201442	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201443	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201445	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201446	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201447	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201448	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201449	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201450	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201451	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201452	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201453	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201454	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201455	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201456	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201457	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201458	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201459	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201461	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201464	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs201466	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs201468	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201469	0.97[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201470	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201471	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201472	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs201475	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201477	0.90[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201478	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs201480	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs201481	0.93[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs201482	0.93[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs201485	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs201486	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs201489	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs201490	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs201492	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs201493	0.96[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs201497	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs201498	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs201500	0.91[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs201502	0.94[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs201503	0.94[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs201504	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs201505	0.94[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs201507	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs201508	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs201509	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs201511	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs201522	0.85[EUR][1000 genomes]
rs201526	0.86[EUR][1000 genomes]
rs201527	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs201529	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs2529095	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2529373	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2734782	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs380175	0.82[EUR][1000 genomes]
rs382228	0.84[EUR][1000 genomes]
rs424028	0.84[ASN][1000 genomes]
rs436287	0.82[EUR][1000 genomes]
rs6950791	0.84[EUR][1000 genomes]
rs6970800	0.84[EUR][1000 genomes]

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101708200-101765000	Weak transcription	Small Intestine	intestine
2	chr7:101715200-101749800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr7:101715400-101749600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr7:101715600-101745200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr7:101715600-101745200	Weak transcription	HSMMtube	muscle
6	chr7:101715800-101741000	Weak transcription	Gastric	stomach
7	chr7:101715800-101741200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr7:101716000-101743000	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr7:101716000-101746600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr7:101716400-101758600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr7:101717800-101741200	Weak transcription	Pancreas	Pancrea
12	chr7:101724000-101741600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr7:101725600-101741000	Weak transcription	Right Ventricle	heart
14	chr7:101725600-101741200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr7:101726200-101741000	Weak transcription	Liver	Liver
16	chr7:101726200-101747800	Weak transcription	Osteobl	bone
17	chr7:101729000-101743600	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr7:101733000-101741000	Weak transcription	K562	blood
19	chr7:101733000-101744200	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr7:101733200-101741000	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr7:101733200-101741000	Weak transcription	Aorta	Aorta
22	chr7:101733200-101741000	Weak transcription	Fetal Lung	lung
23	chr7:101733200-101741000	Weak transcription	Ovary	ovary
24	chr7:101733200-101741200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr7:101733200-101741200	Weak transcription	Lung	lung
26	chr7:101733200-101741400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr7:101733200-101743600	Weak transcription	Primary B cells from cord blood	blood
28	chr7:101733200-101749600	Weak transcription	Esophagus	oesophagus
29	chr7:101733200-101758600	Weak transcription	Psoas Muscle	Psoas
30	chr7:101733400-101741200	Weak transcription	Primary B cells from peripheral blood	blood
31	chr7:101733400-101741400	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr7:101733400-101743600	Weak transcription	GM12878-XiMat	blood
33	chr7:101734400-101741000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr7:101735800-101741800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr7:101735800-101744200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr7:101736600-101741800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr7:101736800-101741600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr7:101737200-101745800	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr7:101737400-101742600	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr7:101737400-101746200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr7:101737400-101747600	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr7:101737400-101754400	Weak transcription	Brain Angular Gyrus	brain
43	chr7:101737600-101741200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr7:101737600-101743200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr7:101737600-101743600	Weak transcription	NHEK	skin
46	chr7:101737800-101741000	Weak transcription	Adipose Nuclei	Adipose
47	chr7:101737800-101742400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr7:101738000-101741000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr7:101738000-101741200	Weak transcription	Fetal Muscle Leg	muscle
50	chr7:101738000-101749800	Weak transcription	Fetal Heart	heart

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