Variant report

Variant	rs34269363
Chromosome Location	chr4:81410457-81410458
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10034974	0.85[EUR][1000 genomes]
rs1027397	0.81[ASN][1000 genomes]
rs1039052	0.81[ASN][1000 genomes]
rs1039053	0.81[ASN][1000 genomes]
rs10857174	0.85[ASN][1000 genomes]
rs11099253	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11731831	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11937407	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11940032	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11944437	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11944925	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12510415	0.80[EUR][1000 genomes]
rs12647313	0.90[ASN][1000 genomes]
rs12650570	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13142845	0.93[ASN][1000 genomes]
rs1352076	0.83[EUR][1000 genomes]
rs1385890	0.83[EUR][1000 genomes]
rs1390252	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1390253	0.84[ASN][1000 genomes]
rs1390255	0.81[ASN][1000 genomes]
rs1486022	0.82[EUR][1000 genomes]
rs1495489	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1495493	0.93[ASN][1000 genomes]
rs1843563	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1872576	0.87[EUR][1000 genomes]
rs1874336	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1905967	0.82[EUR][1000 genomes]
rs1908550	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1971301	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2132267	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2132268	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2132269	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2132271	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2172878	0.98[ASN][1000 genomes]
rs28493682	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2867781	0.83[EUR][1000 genomes]
rs2903671	0.83[EUR][1000 genomes]
rs4693494	0.85[EUR][1000 genomes]
rs4693495	0.85[EUR][1000 genomes]
rs4693537	0.81[EUR][1000 genomes]
rs5019005	0.82[EUR][1000 genomes]
rs55940038	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58593245	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6534967	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6535016	0.84[ASN][1000 genomes]
rs6813764	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6823400	0.87[EUR][1000 genomes]
rs6826104	0.96[ASN][1000 genomes]
rs6827369	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6831485	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6832233	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6835442	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7658613	0.82[EUR][1000 genomes]
rs7660815	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7666589	0.84[ASN][1000 genomes]
rs7685226	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7686715	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7695414	0.84[ASN][1000 genomes]
rs9307720	0.85[EUR][1000 genomes]
rs967941	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9993620	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528410	chr4:81402774-81411380	Weak transcription Enhancers Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	diseases
2	nsv1013945	chr4:81410029-81454166	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81406200-81412600	Weak transcription	Osteobl	bone
2	chr4:81407600-81421800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:81408000-81410800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr4:81408600-81412000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr4:81410400-81411600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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