Variant report

Variant	rs34292533
Chromosome Location	chr18:29511423-29511424
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:29509835..29512655-chr18:29521511..29523719,2	MCF-7	breast:
2	chr18:29506087..29508444-chr18:29510343..29513453,3	MCF-7	breast:
3	chr18:29511145..29516088-chr18:29521483..29523975,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000153339	Chromatin interaction
ENSG00000263823	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16962441	1.00[AMR][1000 genomes]
rs16962696	1.00[AMR][1000 genomes]
rs16962698	1.00[AMR][1000 genomes]
rs16962721	1.00[AMR][1000 genomes]
rs60724618	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61684994	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431975	chr18:29311034-29527902	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1057229	chr18:29335175-29514265	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1067252	chr18:29475073-29583744	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29406200-29518600	Weak transcription	Fetal Brain Male	brain
2	chr18:29417600-29515600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr18:29431800-29512600	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr18:29432600-29521400	Weak transcription	Stomach Mucosa	stomach
5	chr18:29461600-29518600	Weak transcription	Psoas Muscle	Psoas
6	chr18:29462000-29520000	Weak transcription	Fetal Heart	heart
7	chr18:29472800-29512000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr18:29478600-29522000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr18:29479600-29518600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr18:29480600-29511600	Weak transcription	Pancreas	Pancrea
11	chr18:29480600-29519400	Weak transcription	Spleen	Spleen
12	chr18:29481400-29511600	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr18:29482400-29522000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr18:29482600-29521600	Weak transcription	Rectal Smooth Muscle	rectum
15	chr18:29482800-29521600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr18:29484400-29520800	Weak transcription	Fetal Brain Female	brain
17	chr18:29484800-29521000	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr18:29488000-29519600	Weak transcription	Stomach Smooth Muscle	stomach
19	chr18:29490400-29519000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr18:29492600-29519600	Weak transcription	Ovary	ovary
21	chr18:29493000-29521600	Weak transcription	Aorta	Aorta
22	chr18:29493400-29521600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr18:29494000-29518400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr18:29496200-29512600	Strong transcription	HUES64 Cell Line	embryonic stem cell
25	chr18:29496600-29521400	Weak transcription	NHEK	skin
26	chr18:29498400-29511800	Weak transcription	Right Atrium	heart
27	chr18:29499000-29512000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr18:29500600-29521400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr18:29500800-29512800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
30	chr18:29502800-29519400	Weak transcription	GM12878-XiMat	blood
31	chr18:29503000-29518800	Weak transcription	Right Ventricle	heart
32	chr18:29504400-29512200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr18:29504600-29513800	Strong transcription	Monocytes-CD14+_RO01746	blood
34	chr18:29504600-29516600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr18:29505200-29521800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr18:29505400-29511800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
37	chr18:29505400-29512000	Strong transcription	Primary T cells fromperipheralblood	blood
38	chr18:29505600-29512000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr18:29505600-29512000	Strong transcription	Primary B cells from peripheral blood	blood
40	chr18:29505800-29512000	Strong transcription	HUES6 Cell Line	embryonic stem cell
41	chr18:29505800-29512800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr18:29506000-29511600	Strong transcription	HUES48 Cell Line	embryonic stem cell
43	chr18:29506000-29516800	Strong transcription	Fetal Thymus	thymus
44	chr18:29506200-29512600	Strong transcription	Dnd41	blood
45	chr18:29506400-29512600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr18:29506600-29511800	Weak transcription	Brain Angular Gyrus	brain
47	chr18:29506800-29521600	Weak transcription	A549	lung
48	chr18:29507000-29511600	Weak transcription	Brain Substantia Nigra	brain
49	chr18:29508000-29515400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr18:29508000-29515600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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