Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10797087	0.82[EUR][1000 genomes]
rs10797089	0.85[EUR][1000 genomes]
rs10908810	0.81[EUR][1000 genomes]
rs10908811	0.82[EUR][1000 genomes]
rs10908812	0.82[EUR][1000 genomes]
rs10908813	0.87[EUR][1000 genomes]
rs11265514	0.81[EUR][1000 genomes]
rs11265516	0.82[EUR][1000 genomes]
rs11265519	0.82[EUR][1000 genomes]
rs11587040	0.86[EUR][1000 genomes]
rs12080285	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12125065	0.88[EUR][1000 genomes]
rs12740520	0.88[EUR][1000 genomes]
rs1810924	0.83[EUR][1000 genomes]
rs1855186	0.88[EUR][1000 genomes]
rs1930596	0.82[EUR][1000 genomes]
rs1930598	0.88[EUR][1000 genomes]
rs2184064	0.88[EUR][1000 genomes]
rs2225591	0.82[EUR][1000 genomes]
rs3953093	0.87[EUR][1000 genomes]
rs3953094	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3953095	0.88[EUR][1000 genomes]
rs4017453	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4017455	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4129196	0.87[EUR][1000 genomes]
rs4656277	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs4656282	0.81[EUR][1000 genomes]
rs4656964	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530077	chr1:160836448-161284904	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	esv3430322	chr1:160851829-160920480	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv947200	chr1:160870136-160905390	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160880000-160884400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:160880600-160884000	Enhancers	Fetal Intestine Small	intestine
3	chr1:160882000-160883400	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr1:160882000-160883800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr1:160882400-160883600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr1:160882400-160883800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr1:160882600-160883800	Weak transcription	Fetal Intestine Large	intestine
8	chr1:160882800-160883800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr1:160882800-160884800	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr1:160883200-160883600	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr1:160883200-160884200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr1:160883200-160884200	Enhancers	HUES6 Cell Line	embryonic stem cell

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