Variant report

Variant	rs34299771
Chromosome Location	chr4:56458103-56458104
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 110 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:105)

rs_ID	r²[population]
rs10000512	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10011801	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10012559	0.87[ASN][1000 genomes]
rs10018932	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1021306	0.84[ASN][1000 genomes]
rs1021307	0.84[ASN][1000 genomes]
rs10462033	0.84[ASN][1000 genomes]
rs10866424	0.82[ASN][1000 genomes]
rs11732481	0.87[ASN][1000 genomes]
rs11939971	0.86[ASN][1000 genomes]
rs12505265	0.87[ASN][1000 genomes]
rs12509047	0.84[ASN][1000 genomes]
rs13133077	0.93[ASN][1000 genomes]
rs13134079	0.84[ASN][1000 genomes]
rs13434995	0.81[EUR][1000 genomes]
rs1488941	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1522109	0.84[ASN][1000 genomes]
rs1546004	0.84[ASN][1000 genomes]
rs17722870	0.80[ASN][1000 genomes]
rs17722979	0.80[ASN][1000 genomes]
rs17779627	0.80[ASN][1000 genomes]
rs1967078	0.87[ASN][1000 genomes]
rs1979604	0.82[ASN][1000 genomes]
rs1979605	0.82[ASN][1000 genomes]
rs2070062	0.80[ASN][1000 genomes]
rs2101476	0.93[ASN][1000 genomes]
rs2130038	0.93[ASN][1000 genomes]
rs2130040	0.82[ASN][1000 genomes]
rs2412658	0.93[ASN][1000 genomes]
rs2412659	0.93[ASN][1000 genomes]
rs2412661	0.93[ASN][1000 genomes]
rs2412662	0.89[ASN][1000 genomes]
rs2412664	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28435401	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28451532	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28708716	0.80[ASN][1000 genomes]
rs28713371	0.81[EUR][1000 genomes]
rs28756087	0.81[EUR][1000 genomes]
rs2899038	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3805156	0.84[ASN][1000 genomes]
rs4336288	0.93[ASN][1000 genomes]
rs4865006	0.84[ASN][1000 genomes]
rs4865012	0.82[ASN][1000 genomes]
rs4865014	0.82[ASN][1000 genomes]
rs55729020	0.84[ASN][1000 genomes]
rs55869433	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55885973	0.80[ASN][1000 genomes]
rs56152424	0.93[ASN][1000 genomes]
rs56196624	0.84[ASN][1000 genomes]
rs56288855	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs57338268	0.80[ASN][1000 genomes]
rs58476959	0.84[ASN][1000 genomes]
rs62303715	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62303716	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62303718	0.80[ASN][1000 genomes]
rs62303722	0.80[ASN][1000 genomes]
rs62303724	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62303726	0.84[ASN][1000 genomes]
rs62303728	0.84[ASN][1000 genomes]
rs62303730	0.84[ASN][1000 genomes]
rs62303731	0.84[ASN][1000 genomes]
rs62303732	0.84[ASN][1000 genomes]
rs62305264	0.84[ASN][1000 genomes]
rs62305265	0.84[ASN][1000 genomes]
rs62305266	0.82[ASN][1000 genomes]
rs62305267	0.84[ASN][1000 genomes]
rs62305268	0.84[ASN][1000 genomes]
rs62305269	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62305270	0.84[ASN][1000 genomes]
rs62305271	0.84[ASN][1000 genomes]
rs62309728	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62309729	0.84[ASN][1000 genomes]
rs62309730	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62309758	0.82[ASN][1000 genomes]
rs62309759	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62310862	0.93[ASN][1000 genomes]
rs62310866	0.93[ASN][1000 genomes]
rs62310884	0.88[ASN][1000 genomes]
rs6554282	0.84[ASN][1000 genomes]
rs6554283	0.84[ASN][1000 genomes]
rs6554285	0.84[ASN][1000 genomes]
rs6554290	0.87[ASN][1000 genomes]
rs6554291	0.87[ASN][1000 genomes]
rs67963898	0.80[ASN][1000 genomes]
rs6828474	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6830728	0.93[ASN][1000 genomes]
rs6846764	0.82[ASN][1000 genomes]
rs6848755	0.93[ASN][1000 genomes]
rs6851971	0.82[ASN][1000 genomes]
rs6853506	0.82[ASN][1000 genomes]
rs716806	0.93[ASN][1000 genomes]
rs73236149	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73236153	0.93[ASN][1000 genomes]
rs7659095	0.84[ASN][1000 genomes]
rs7660668	0.84[ASN][1000 genomes]
rs7665286	0.93[ASN][1000 genomes]
rs7665846	0.93[ASN][1000 genomes]
rs7681414	0.84[ASN][1000 genomes]
rs7683997	0.93[ASN][1000 genomes]
rs7697067	0.84[ASN][1000 genomes]
rs7698022	0.84[ASN][1000 genomes]
rs972446	0.87[ASN][1000 genomes]
rs9790448	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9993599	0.93[ASN][1000 genomes]
rs9996936	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3328582	chr4:56164136-56486156	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	esv2755990	chr4:56317136-57143037	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
3	nsv10496	chr4:56336946-56841137	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
4	nsv998179	chr4:56425126-56694339	Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv932636	chr4:56438618-56667329	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:56441200-56464400	Weak transcription	K562	blood
2	chr4:56456200-56458400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:56458000-56458400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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