Variant report

Variant	rs34302704
Chromosome Location	chr2:33720634-33720635
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:33718664..33721605-chr2:33823247..33825969,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000119812	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17038544	1.00[ASN][1000 genomes]
rs34719322	0.92[EUR][1000 genomes]
rs6719953	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005435	chr2:33136117-33747159	Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv535624	chr2:33136117-33747159	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
3	esv1829750	chr2:33704194-33740571	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3457478	chr2:33716912-33727989	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv3457477	chr2:33717011-33728006	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv3457479	chr2:33717011-33728006	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv828775	chr2:33717066-33727682	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33710400-33775400	Weak transcription	Pancreas	Pancrea
2	chr2:33712200-33747600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr2:33714400-33726000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr2:33716000-33721400	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr2:33717000-33722200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr2:33717000-33723600	Weak transcription	Lung	lung
7	chr2:33717200-33721600	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr2:33718400-33721000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr2:33718400-33722400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr2:33718400-33724200	Weak transcription	Right Atrium	heart
11	chr2:33718600-33720800	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr2:33719000-33730200	Enhancers	Primary B cells from peripheral blood	blood
13	chr2:33719200-33721000	Enhancers	Right Ventricle	heart
14	chr2:33719200-33721000	Enhancers	NHDF-Ad	bronchial
15	chr2:33719200-33721800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr2:33719200-33725400	Enhancers	Brain Hippocampus Middle	brain
17	chr2:33719400-33721000	Enhancers	Brain Anterior Caudate	brain
18	chr2:33719400-33722400	Enhancers	HUVEC	blood vessel
19	chr2:33719400-33725400	Enhancers	Primary hematopoietic stem cells	blood
20	chr2:33719400-33725400	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr2:33719600-33721000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr2:33719600-33721800	Flanking Active TSS	GM12878-XiMat	blood
23	chr2:33719600-33724000	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr2:33719600-33724800	Enhancers	Primary B cells from cord blood	blood
25	chr2:33719800-33721400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr2:33719800-33723000	Weak transcription	Duodenum Mucosa	Duodenum
27	chr2:33720000-33721400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr2:33720000-33722200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr2:33720000-33722400	Enhancers	Brain Substantia Nigra	brain
30	chr2:33720000-33722600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr2:33720000-33725200	Enhancers	Fetal Heart	heart
32	chr2:33720200-33720800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr2:33720200-33720800	Enhancers	Small Intestine	intestine
34	chr2:33720200-33721200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr2:33720200-33721200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr2:33720200-33721800	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr2:33720200-33721800	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr2:33720200-33722000	Enhancers	Left Ventricle	heart
39	chr2:33720400-33722600	Weak transcription	Brain Cingulate Gyrus	brain
40	chr2:33720600-33720800	Enhancers	Fetal Muscle Trunk	muscle
41	chr2:33720600-33721000	Enhancers	A549	lung
42	chr2:33720600-33721600	Weak transcription	Psoas Muscle	Psoas

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links