Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:210789734..210791286-chr1:210797851..210799560,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KCNH1-4	chr1:210797798-210798636	ucscGeneNc_uc001hje_1

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12406888	0.81[AMR][1000 genomes]
rs34245695	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs34457130	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs35004650	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35667524	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35667921	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs36088644	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs61827420	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs61827421	0.84[AMR][1000 genomes]
rs61827431	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs61827432	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs61827448	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs61827449	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs71638181	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs951861	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv522480	chr1:210779936-210848344	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA miRNA target site	n/a	inside rSNPs	diseases
3	esv1825229	chr1:210789477-210854976	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210790400-210801800	Weak transcription	Pancreas	Pancrea
2	chr1:210790600-210807000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:210795000-210801400	Weak transcription	Aorta	Aorta
4	chr1:210795200-210798200	Weak transcription	Brain Anterior Caudate	brain
5	chr1:210795200-210799200	Strong transcription	HSMMtube	muscle
6	chr1:210795400-210822600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr1:210795800-210806600	Weak transcription	Primary hematopoietic stem cells	blood
8	chr1:210796200-210801400	Weak transcription	Left Ventricle	heart
9	chr1:210796400-210798800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr1:210796800-210799400	Weak transcription	Primary B cells from cord blood	blood
11	chr1:210797000-210801800	Weak transcription	Ovary	ovary
12	chr1:210797400-210799200	Strong transcription	HSMM	muscle
13	chr1:210797400-210799800	Enhancers	Brain Hippocampus Middle	brain
14	chr1:210797600-210799400	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr1:210797800-210798600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
16	chr1:210797800-210799000	Enhancers	Brain Angular Gyrus	brain
17	chr1:210797800-210799000	Enhancers	Brain Cingulate Gyrus	brain
18	chr1:210797800-210799400	Enhancers	Brain Substantia Nigra	brain
19	chr1:210798000-210798600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr1:210798000-210798600	Enhancers	Adipose Nuclei	Adipose

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