Variant report

Variant	rs34329419
Chromosome Location	chr8:99800054-99800055
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10504986	0.81[EUR][1000 genomes]
rs16897111	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4554439	0.86[EUR][1000 genomes]
rs4574821	0.86[EUR][1000 genomes]
rs55807423	0.86[EUR][1000 genomes]
rs55878650	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs55933347	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs55947965	0.86[EUR][1000 genomes]
rs56099380	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56185259	0.86[EUR][1000 genomes]
rs56246659	0.86[EUR][1000 genomes]
rs56290864	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56356780	0.86[EUR][1000 genomes]
rs72666649	0.86[EUR][1000 genomes]
rs72666652	0.86[EUR][1000 genomes]
rs72666655	0.86[EUR][1000 genomes]
rs72666661	0.86[EUR][1000 genomes]
rs72666665	0.86[EUR][1000 genomes]
rs72666666	0.86[EUR][1000 genomes]
rs72666673	0.86[EUR][1000 genomes]
rs72666676	0.86[EUR][1000 genomes]
rs72666678	0.86[EUR][1000 genomes]
rs72666680	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72666684	0.86[EUR][1000 genomes]
rs72666685	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72666688	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72666689	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72666690	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72666699	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72668403	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72668407	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72668412	0.81[EUR][1000 genomes]
rs7817630	0.81[EUR][1000 genomes]
rs7835203	0.86[EUR][1000 genomes]
rs7842869	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891218	chr8:99507313-99906221	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1027025	chr8:99672977-100115315	Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv539690	chr8:99672977-100115315	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv891220	chr8:99681858-99867419	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
5	nsv1025685	chr8:99706280-99826236	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv539691	chr8:99706280-99826236	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv1031089	chr8:99715785-100399935	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
8	nsv981968	chr8:99794499-99809509	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:99797200-99802600	Weak transcription	Gastric	stomach
2	chr8:99797600-99809200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr8:99797600-99809200	Weak transcription	Pancreas	Pancrea
4	chr8:99797800-99800200	Weak transcription	Thymus	Thymus
5	chr8:99797800-99806000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr8:99797800-99809200	Weak transcription	Ovary	ovary
7	chr8:99798000-99800800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr8:99798000-99804400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr8:99798400-99808400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr8:99798600-99800400	Weak transcription	A549	lung
11	chr8:99799200-99808200	Weak transcription	NHEK	skin
12	chr8:99799400-99808400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr8:99799600-99800400	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr8:99799800-99800200	Enhancers	Colon Smooth Muscle	Colon

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