Variant report

Variant	rs34336930
Chromosome Location	chr11:70855021-70855022
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11822962	0.84[ASN][1000 genomes]
rs11827505	0.84[ASN][1000 genomes]
rs1336	0.84[ASN][1000 genomes]
rs4075045	0.84[ASN][1000 genomes]
rs57772484	0.84[ASN][1000 genomes]
rs58061852	0.84[ASN][1000 genomes]
rs58224946	0.84[ASN][1000 genomes]
rs59858246	0.84[ASN][1000 genomes]
rs73521172	0.84[ASN][1000 genomes]
rs73521173	0.84[ASN][1000 genomes]
rs73521175	0.84[ASN][1000 genomes]
rs73521181	0.84[ASN][1000 genomes]
rs73521182	0.84[ASN][1000 genomes]
rs73521185	0.84[ASN][1000 genomes]
rs73521197	0.84[ASN][1000 genomes]
rs73521200	0.84[ASN][1000 genomes]
rs73523004	0.84[ASN][1000 genomes]
rs73523006	0.84[ASN][1000 genomes]
rs7927453	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048123	chr11:70795222-71231382	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:70824000-70861600	Weak transcription	A549	lung
2	chr11:70832200-70860600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:70832200-70863600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr11:70832200-70864400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr11:70841200-70857400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:70842400-70860600	Weak transcription	Fetal Intestine Large	intestine
7	chr11:70842600-70860800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr11:70843200-70856800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:70843400-70857200	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr11:70851400-70857600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr11:70851600-70855200	Weak transcription	Fetal Stomach	stomach
12	chr11:70851600-70857400	Weak transcription	Gastric	stomach
13	chr11:70851600-70857600	Weak transcription	Placenta	Placenta
14	chr11:70851800-70855200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr11:70852000-70857400	Weak transcription	Liver	Liver
16	chr11:70852200-70855200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr11:70852200-70855800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr11:70852400-70855400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr11:70854400-70858800	Strong transcription	Fetal Intestine Small	intestine
20	chr11:70854400-70858800	Strong transcription	Pancreas	Pancrea
21	chr11:70854400-70859800	Strong transcription	HepG2	liver
22	chr11:70854600-70855400	Enhancers	Brain Anterior Caudate	brain
23	chr11:70855000-70855400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr11:70855000-70855400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr11:70855000-70855600	Enhancers	Brain Inferior Temporal Lobe	brain

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