Variant report

Variant	rs34347387
Chromosome Location	chr5:152456425-152456426
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17096206	0.80[AFR][1000 genomes]
rs17113961	0.83[AFR][1000 genomes]
rs17113985	0.80[AFR][1000 genomes]
rs17114003	0.80[AFR][1000 genomes]
rs2099664	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023676	chr5:151979253-152925064	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv537927	chr5:151979253-152925064	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv600089	chr5:152200109-152488891	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1017812	chr5:152220845-152467431	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv537928	chr5:152220845-152467431	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv883050	chr5:152277537-152540026	Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv949596	chr5:152343943-152548821	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:152448200-152458400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:152454600-152458200	Weak transcription	Right Atrium	heart
3	chr5:152456200-152456600	Active TSS	H9 Cell Line	embryonic stem cell
4	chr5:152456200-152456600	Active TSS	iPS-15b Cell Line	embryonic stem cell
5	chr5:152456200-152456800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
6	chr5:152456400-152456600	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
7	chr5:152456400-152456600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr5:152456400-152456800	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
9	chr5:152456400-152456800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
10	chr5:152456400-152456800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr5:152456400-152457000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr5:152456400-152457200	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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