Variant report
| Variant | rs34355723 |
|---|---|
| Chromosome Location | chr1:211379129-211379130 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:211377631..211380147-chr1:211432111..211434053,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000117625 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs11119713 | 0.83[EUR][1000 genomes] |
| rs11803005 | 0.83[EUR][1000 genomes] |
| rs11806910 | 0.97[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs12731366 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12756590 | 0.85[EUR][1000 genomes] |
| rs17267484 | 0.80[EUR][1000 genomes] |
| rs1890326 | 0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs34813082 | 0.83[EUR][1000 genomes] |
| rs35228985 | 0.83[EUR][1000 genomes] |
| rs35374835 | 0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35995968 | 0.84[EUR][1000 genomes] |
| rs60096533 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs66526219 | 0.83[EUR][1000 genomes] |
| rs6686281 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs67437198 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs7556054 | 0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv1806574 | chr1:211369721-211383129 | ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 2 | esv1808906 | chr1:211369721-211383129 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv945277 | chr1:211377389-211382878 | Enhancers | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
