Variant report

Variant	rs34360904
Chromosome Location	chr5:116747365-116747366
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr5:116747264-116747431	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
LINC00992	TF binding region

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs13164296	0.84[EUR][1000 genomes]
rs13164536	0.84[EUR][1000 genomes]
rs13165072	0.82[EUR][1000 genomes]
rs13175962	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13176313	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13176472	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13176885	0.86[AMR][1000 genomes]
rs13177703	0.84[EUR][1000 genomes]
rs13180710	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13180714	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13184765	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1366184	0.84[EUR][1000 genomes]
rs17141699	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17141717	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17398971	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17839480	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1820667	0.84[EUR][1000 genomes]
rs35183133	0.84[EUR][1000 genomes]
rs35515870	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35753719	0.84[EUR][1000 genomes]
rs55788310	0.84[EUR][1000 genomes]
rs55912291	0.84[EUR][1000 genomes]
rs62378254	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62378255	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62378256	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62378257	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62378258	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62380061	0.84[EUR][1000 genomes]
rs66497971	0.84[EUR][1000 genomes]
rs67546109	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6861435	0.84[EUR][1000 genomes]
rs6887390	0.84[EUR][1000 genomes]
rs962006	0.84[EUR][1000 genomes]
rs962007	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882755	chr5:116647725-116748877	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv830457	chr5:116724777-116875060	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv599487	chr5:116732456-116772093	Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116747000-116748200	Enhancers	HUVEC	blood vessel
2	chr5:116747200-116747600	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr5:116747200-116747600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr5:116747200-116747600	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr5:116747200-116747800	Enhancers	Sigmoid Colon	Sigmoid Colon
6	chr5:116747200-116748000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links