Variant report

Variant	rs34366526
Chromosome Location	chr2:182082693-182082694
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:182067091..182069385-chr2:182080584..182082731,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11678840	0.92[ASN][1000 genomes]
rs11684463	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11893821	0.83[AMR][1000 genomes]
rs12999974	0.83[AMR][1000 genomes]
rs13002424	0.98[ASN][1000 genomes]
rs13029217	0.93[ASN][1000 genomes]
rs13033038	0.83[ASN][1000 genomes]
rs13033467	0.83[AMR][1000 genomes]
rs13035276	0.98[ASN][1000 genomes]
rs34700861	0.98[ASN][1000 genomes]
rs34714467	0.84[AMR][1000 genomes]
rs34790351	0.98[ASN][1000 genomes]
rs35110674	0.98[ASN][1000 genomes]
rs35190308	0.98[ASN][1000 genomes]
rs35250663	0.97[ASN][1000 genomes]
rs35543145	0.84[AMR][1000 genomes]
rs4432412	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4514840	0.84[ASN][1000 genomes]
rs55900432	0.84[AMR][1000 genomes]
rs55954384	0.84[AMR][1000 genomes]
rs56085338	0.98[ASN][1000 genomes]
rs6709702	0.98[ASN][1000 genomes]
rs6713632	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6746347	0.83[AMR][1000 genomes]
rs6752921	0.98[ASN][1000 genomes]
rs6759865	0.83[AMR][1000 genomes]
rs7558428	0.84[AMR][1000 genomes]
rs7598010	0.87[ASN][1000 genomes]
rs7598960	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431824	chr2:181946115-182118559	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1005870	chr2:181968637-182921439	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv536063	chr2:181968637-182921439	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv1002647	chr2:182078521-182392273	Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
5	nsv536064	chr2:182078521-182392273	Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182074800-182087000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr2:182082000-182083000	Weak transcription	Fetal Brain Female	brain
3	chr2:182082400-182082800	Weak transcription	Brain Germinal Matrix	brain

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