Variant report

Variant	rs343690
Chromosome Location	chr6:80618176-80618177
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:80614921..80617147-chr6:80617384..80618992,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs151668	1.00[AMR][1000 genomes]
rs151670	1.00[AMR][1000 genomes]
rs163983	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs239518	1.00[AMR][1000 genomes]
rs239519	1.00[AMR][1000 genomes]
rs239530	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs239531	1.00[AMR][1000 genomes]
rs343617	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs343619	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs343621	1.00[AMR][1000 genomes]
rs343622	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs343624	1.00[AMR][1000 genomes]
rs343625	1.00[AMR][1000 genomes]
rs343626	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs343630	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs343633	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs343634	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs343692	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs343695	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs343702	1.00[EUR][1000 genomes]
rs343703	1.00[AMR][1000 genomes]
rs343704	1.00[EUR][1000 genomes]
rs346364	1.00[AMR][1000 genomes]
rs346365	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57791020	1.00[ASN][1000 genomes]
rs60369726	1.00[ASN][1000 genomes]
rs61092458	1.00[ASN][1000 genomes]
rs62411141	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028607	chr6:79853272-80767716	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv1032347	chr6:80284809-80694778	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	esv3475140	chr6:80592690-80679283	Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	esv3475142	chr6:80592789-80679132	Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80617200-80619200	Weak transcription	Psoas Muscle	Psoas
2	chr6:80617600-80625600	Weak transcription	Fetal Thymus	thymus
3	chr6:80618000-80618400	Weak transcription	Thymus	Thymus

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