Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10448011	0.98[EUR][1000 genomes]
rs12056729	0.98[EUR][1000 genomes]
rs12550346	0.94[EUR][1000 genomes]
rs12674652	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13248468	0.98[EUR][1000 genomes]
rs13250382	0.93[EUR][1000 genomes]
rs13278300	0.95[EUR][1000 genomes]
rs16922692	0.82[ASN][1000 genomes]
rs16939396	0.93[EUR][1000 genomes]
rs16939398	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16939408	0.93[EUR][1000 genomes]
rs16939444	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16939445	0.95[EUR][1000 genomes]
rs1876718	0.95[EUR][1000 genomes]
rs2667282	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2891720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs33961425	0.81[ASN][1000 genomes]
rs3735973	0.93[EUR][1000 genomes]
rs4510886	0.98[EUR][1000 genomes]
rs4873311	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4873316	0.98[EUR][1000 genomes]
rs59888224	0.98[EUR][1000 genomes]
rs72640596	0.83[AFR][1000 genomes]
rs9650217	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025068	chr8:49953397-50370208	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	esv3401785	chr8:49986448-50018640	Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	esv3383502	chr8:49991448-50020707	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1023325	chr8:49994793-50050571	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv3507579	chr8:50008449-50010347	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50008200-50015400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:50008200-50015600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr8:50009200-50010200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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