Variant report

Variant	rs34393544
Chromosome Location	chr4:143567138-143567139
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:143552083..143553625-chr4:143567015..143569107,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10000770	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10006418	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10015404	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10020322	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10020865	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11732693	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs13103597	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs13114437	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13353799	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1348362	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1348363	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28415364	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28485272	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28673920	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28733118	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28758601	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34082059	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34234953	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34626802	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34699252	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35255414	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35366693	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36101393	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs36142547	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60361448	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62330251	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62331862	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6834451	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6849164	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6856817	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830101	chr4:143518810-143684392	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143537000-143575800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:143559200-143568600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr4:143564800-143569400	Weak transcription	Aorta	Aorta
4	chr4:143565000-143568200	Enhancers	Dnd41	blood
5	chr4:143565400-143567600	Enhancers	Fetal Thymus	thymus
6	chr4:143565600-143568400	Enhancers	Primary T cells from cord blood	blood
7	chr4:143566000-143567200	Enhancers	Thymus	Thymus
8	chr4:143566400-143567200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr4:143566400-143567200	Enhancers	HSMMtube	muscle
10	chr4:143566400-143567400	Enhancers	HUVEC	blood vessel
11	chr4:143566400-143567600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr4:143566400-143568000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr4:143566400-143568000	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr4:143566400-143568000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr4:143566400-143568000	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr4:143566400-143568400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr4:143566600-143567200	Enhancers	Primary T cells fromperipheralblood	blood
18	chr4:143566600-143567200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr4:143566600-143567200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr4:143566600-143567200	Enhancers	HSMM	muscle
21	chr4:143566600-143567400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
22	chr4:143566800-143567200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
23	chr4:143566800-143569600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr4:143567000-143567200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
25	chr4:143567000-143567200	Flanking Active TSS	Fetal Heart	heart
26	chr4:143567000-143567400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
27	chr4:143567000-143568800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--

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