Variant report

Variant	rs34398102
Chromosome Location	chr12:33169043-33169044
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:33166950..33169241-chr12:33179153..33181275,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11052283	1.00[AFR][1000 genomes]
rs12811328	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12815360	0.83[AMR][1000 genomes]
rs12816683	1.00[AMR][1000 genomes]
rs12827254	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12827744	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12827864	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12830581	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12830962	0.83[AMR][1000 genomes]
rs17553487	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17623138	0.83[AMR][1000 genomes]
rs34018607	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34113579	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34202049	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34234620	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34506464	1.00[AMR][1000 genomes]
rs34777911	0.83[AMR][1000 genomes]
rs34942504	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35118163	0.83[AMR][1000 genomes]
rs35151039	0.83[AMR][1000 genomes]
rs35285975	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35398283	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35399277	0.83[AMR][1000 genomes]
rs35522863	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35607659	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35681913	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35687751	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35760728	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35846513	0.83[AMR][1000 genomes]
rs35848741	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35895521	0.83[AMR][1000 genomes]
rs35942647	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36042953	1.00[AMR][1000 genomes]
rs4076733	1.00[AMR][1000 genomes]
rs71457664	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs71457666	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs71457669	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71457671	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71457675	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71457678	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71457681	0.87[EUR][1000 genomes]
rs71457684	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71457691	0.83[AMR][1000 genomes]
rs71457692	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530421	chr12:32825335-33465991	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv832367	chr12:33063644-33298967	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1039909	chr12:33132909-33244419	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1053849	chr12:33132909-33279169	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:33168600-33170000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr12:33168800-33169400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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