Variant report

Variant	rs34418856
Chromosome Location	chr7:48589361-48589362
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs12718283	0.93[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs12718284	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12718285	0.84[EUR][1000 genomes]
rs12718286	0.84[EUR][1000 genomes]
rs12718287	0.84[EUR][1000 genomes]
rs13224880	0.84[EUR][1000 genomes]
rs13225206	0.84[EUR][1000 genomes]
rs13227867	0.84[EUR][1000 genomes]
rs13228431	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13230347	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13231485	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13235315	0.87[EUR][1000 genomes]
rs13237182	0.84[EUR][1000 genomes]
rs17132446	0.84[EUR][1000 genomes]
rs17132489	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34371536	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34551031	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34768692	0.96[AFR][1000 genomes]
rs34836438	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34974785	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35022901	0.84[EUR][1000 genomes]
rs35072701	0.84[EUR][1000 genomes]
rs35568687	0.84[EUR][1000 genomes]
rs35621720	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35860070	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35896585	0.84[EUR][1000 genomes]
rs35901095	0.84[EUR][1000 genomes]
rs57739046	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs59081912	0.96[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62447326	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs6583453	0.84[EUR][1000 genomes]
rs6583454	0.84[EUR][1000 genomes]
rs6583455	0.84[EUR][1000 genomes]
rs6946184	0.81[EUR][1000 genomes]
rs6973889	0.84[EUR][1000 genomes]
rs6977751	0.84[EUR][1000 genomes]
rs6977918	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7783286	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7783364	0.84[EUR][1000 genomes]
rs7785482	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7788437	0.96[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7793005	0.84[EUR][1000 genomes]
rs7803637	0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830992	chr7:48497408-48686442	Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv888008	chr7:48568425-48652224	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
3	esv2764056	chr7:48580914-48592025	Enhancers Strong transcription Weak transcription	n/a	n/a	inside rSNPs	diseases
4	esv11768	chr7:48581423-48592171	Weak transcription Enhancers Strong transcription	n/a	n/a	inside rSNPs	diseases
5	nsv514416	chr7:48581830-48592050	Enhancers Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases
6	esv1818564	chr7:48581852-48592025	Strong transcription Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
7	esv2421774	chr7:48581852-48592025	Enhancers Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases
8	nsv442042	chr7:48581852-48592025	Weak transcription Strong transcription Enhancers	n/a	n/a	inside rSNPs	diseases
9	nsv527625	chr7:48586783-48596337	Enhancers Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:48588800-48591400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:48589200-48602800	Weak transcription	Primary neutrophils fromperipheralblood	blood

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