Variant report

Variant	rs344201
Chromosome Location	chr8:62945023-62945024
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:62938324..62940496-chr8:62944445..62947217,2	K562	blood:
2	chr8:62943835..62945926-chr8:62946749..62948814,2	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10107785	0.81[EUR][1000 genomes]
rs1040195	0.81[EUR][1000 genomes]
rs11990400	0.81[EUR][1000 genomes]
rs1400506	0.81[EUR][1000 genomes]
rs1400512	0.86[EUR][1000 genomes]
rs1516994	0.86[EUR][1000 genomes]
rs1516995	0.86[EUR][1000 genomes]
rs1546639	0.85[EUR][1000 genomes]
rs1546640	0.86[EUR][1000 genomes]
rs1607125	0.87[EUR][1000 genomes]
rs1814134	0.81[EUR][1000 genomes]
rs2138642	0.80[EUR][1000 genomes]
rs2176346	0.81[EUR][1000 genomes]
rs2203659	0.81[EUR][1000 genomes]
rs2351083	0.87[EUR][1000 genomes]
rs28634373	0.85[EUR][1000 genomes]
rs28804830	0.87[EUR][1000 genomes]
rs344205	0.85[EUR][1000 genomes]
rs344208	0.86[EUR][1000 genomes]
rs344243	0.86[EUR][1000 genomes]
rs344244	0.86[EUR][1000 genomes]
rs344249	0.86[EUR][1000 genomes]
rs344253	0.86[EUR][1000 genomes]
rs344263	0.88[EUR][1000 genomes]
rs344264	0.88[EUR][1000 genomes]
rs344265	0.88[EUR][1000 genomes]
rs344266	0.86[EUR][1000 genomes]
rs344267	0.87[EUR][1000 genomes]
rs344271	0.86[EUR][1000 genomes]
rs35035266	0.85[EUR][1000 genomes]
rs35999143	0.83[EUR][1000 genomes]
rs55819473	0.86[EUR][1000 genomes]
rs56098200	0.85[EUR][1000 genomes]
rs57027979	0.86[EUR][1000 genomes]
rs57232729	0.86[EUR][1000 genomes]
rs59040850	0.87[EUR][1000 genomes]
rs59691363	0.85[EUR][1000 genomes]
rs61402923	0.84[EUR][1000 genomes]
rs61475697	0.85[EUR][1000 genomes]
rs62508546	0.83[EUR][1000 genomes]
rs7814557	0.87[EUR][1000 genomes]
rs7818829	0.86[EUR][1000 genomes]
rs7832965	0.86[EUR][1000 genomes]
rs9694964	0.87[EUR][1000 genomes]
rs978254	0.81[EUR][1000 genomes]
rs978255	0.81[EUR][1000 genomes]
rs992841	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890951	chr8:62889169-62989464	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv890952	chr8:62898648-62989464	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv890953	chr8:62899559-62989464	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv890954	chr8:62919691-63023132	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv890955	chr8:62919691-63062581	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv520442	chr8:62928715-62962071	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:62940800-62945600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:62940800-62946000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr8:62944200-62945200	Flanking Active TSS	A549	lung
4	chr8:62945000-62946000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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