Variant report

Variant	rs34421003
Chromosome Location	chr14:56283147-56283148
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10134507	0.93[EUR][1000 genomes]
rs11620875	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11621835	0.84[EUR][1000 genomes]
rs11622627	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11622641	0.96[EUR][1000 genomes]
rs11622710	0.95[EUR][1000 genomes]
rs11624167	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11624516	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11625571	0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11625869	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11626057	0.84[EUR][1000 genomes]
rs11627629	0.81[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs11628040	0.96[EUR][1000 genomes]
rs12890121	0.85[EUR][1000 genomes]
rs12894971	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17253841	0.96[EUR][1000 genomes]
rs17832467	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1999705	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1999706	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2105058	0.86[EUR][1000 genomes]
rs2152287	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2184561	0.82[EUR][1000 genomes]
rs2342594	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2342595	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34096981	0.86[EUR][1000 genomes]
rs34540577	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34663121	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35290945	0.84[EUR][1000 genomes]
rs35527253	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35559254	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs36096896	0.85[EUR][1000 genomes]
rs36149160	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs36188950	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4601950	0.84[EUR][1000 genomes]
rs55788205	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55837858	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57658601	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61975563	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61975579	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61977780	0.96[EUR][1000 genomes]
rs61977781	0.96[EUR][1000 genomes]
rs61977782	0.96[EUR][1000 genomes]
rs61977785	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs999817	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901966	chr14:56160904-56436203	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv901977	chr14:56213392-56492996	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56274600-56284400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:56280400-56283200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr14:56281000-56283200	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr14:56281000-56283200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr14:56281400-56283400	Enhancers	Dnd41	blood
6	chr14:56281600-56285400	Weak transcription	Stomach Mucosa	stomach
7	chr14:56282400-56283200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr14:56282600-56283200	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr14:56282800-56283200	Enhancers	Gastric	stomach
10	chr14:56282800-56283200	Enhancers	Spleen	Spleen
11	chr14:56283000-56283200	ZNF genes & repeats	Pancreas	Pancrea

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