Variant report

Variant	rs34427371
Chromosome Location	chr2:184161256-184161257
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11162508	1.00[ASN][1000 genomes]
rs12060353	1.00[ASN][1000 genomes]
rs12065196	1.00[ASN][1000 genomes]
rs12069538	1.00[ASN][1000 genomes]
rs12074883	1.00[ASN][1000 genomes]
rs12723149	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12731181	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12737007	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12743477	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12750516	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12751216	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17393482	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17397597	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2057425	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2146490	0.82[EUR][1000 genomes]
rs34491075	1.00[ASN][1000 genomes]
rs34635429	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34727624	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35153996	0.94[EUR][1000 genomes]
rs35223399	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35337590	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35735651	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35886379	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35922757	1.00[ASN][1000 genomes]
rs36037890	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36088152	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41309153	0.94[EUR][1000 genomes]
rs41313355	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67458600	0.82[EUR][1000 genomes]
rs71641401	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71643204	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71643205	0.93[EUR][1000 genomes]
rs7539356	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7539847	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs898	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs899	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009882	chr2:183213152-184171519	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv875485	chr2:183827018-184195265	Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1010799	chr2:183855680-184244721	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv536072	chr2:183855680-184244721	Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv1014807	chr2:184123737-184181052	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:184157200-184180200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:184160400-184165600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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