Variant report
| Variant | rs344309 |
|---|---|
| Chromosome Location | chr8:62881271-62881272 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs12675288 | 0.87[ASN][1000 genomes] |
| rs12679842 | 0.89[ASN][1000 genomes] |
| rs2882578 | 0.82[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs344202 | 0.88[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs344214 | 0.88[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs344235 | 0.90[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs344247 | 0.88[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs344250 | 0.88[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs344255 | 0.88[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs344256 | 0.88[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs344268 | 0.82[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs344269 | 0.82[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs344275 | 0.85[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs344286 | 0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs344336 | 0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4430087 | 0.82[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs57522057 | 0.87[ASN][1000 genomes] |
| rs675161 | 0.81[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs7014220 | 0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7832083 | 0.89[ASN][1000 genomes] |
| rs7834519 | 0.87[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1024432 | chr8:62086247-62898782 | Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 31 gene(s) | inside rSNPs | diseases |
| 2 | nsv932198 | chr8:62336705-62914562 | Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 25 gene(s) | inside rSNPs | diseases |
| 3 | nsv831338 | chr8:62736394-62913048 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:62881200-62881600 | Enhancers | iPS DF 19.11 Cell Line | embryonic stem cell |
