The 2.0 version of rSNPBase

Variant report

Variant rs34440485
Chromosome Location chr1:211549553-211549554
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:102 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:211510600-211555400 Weak transcription Skeletal Muscle Male skeletal muscle
2 chr1:211514800-211552200 Weak transcription Skeletal Muscle Female skeletal muscle
3 chr1:211515000-211555000 Weak transcription Hela-S3 cervix
4 chr1:211515000-211555800 Weak transcription Esophagus oesophagus
5 chr1:211521200-211550200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
6 chr1:211521600-211555200 Weak transcription Pancreatic Islets Pancreatic Islet
7 chr1:211525000-211555600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
8 chr1:211525400-211550200 Weak transcription NHDF-Ad bronchial
9 chr1:211525400-211555000 Weak transcription Fetal Lung lung
10 chr1:211525600-211550200 Weak transcription H9 Cell Line embryonic stem cell
11 chr1:211526600-211555400 Weak transcription Cortex derived primary cultured neurospheres brain
12 chr1:211526800-211550800 Weak transcription Small Intestine intestine
13 chr1:211527400-211550400 Weak transcription ES-I3 Cell Line embryonic stem cell
14 chr1:211528000-211551400 Strong transcription Primary B cells from peripheral blood blood
15 chr1:211528200-211550600 Strong transcription Primary T regulatory cells fromperipheralblood blood
16 chr1:211528800-211554600 Weak transcription Psoas Muscle Psoas
17 chr1:211529400-211550400 Strong transcription Fetal Thymus thymus
18 chr1:211529600-211551200 Strong transcription Primary Natural Killer cells fromperipheralblood blood
19 chr1:211530200-211555800 Weak transcription Pancreas Pancrea
20 chr1:211530400-211555200 Weak transcription Brain Anterior Caudate brain
21 chr1:211530600-211550000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
22 chr1:211530600-211555600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
23 chr1:211531000-211551600 Weak transcription NHLF lung
24 chr1:211531200-211550000 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
25 chr1:211531200-211550000 Weak transcription HSMM muscle
26 chr1:211533400-211550200 Strong transcription Primary T helper cells fromperipheralblood blood
27 chr1:211533400-211551200 Strong transcription Primary T cells fromperipheralblood blood
28 chr1:211533400-211552000 Weak transcription Muscle Satellite Cultured Cells --
29 chr1:211533800-211554800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
30 chr1:211534600-211555800 Weak transcription Gastric stomach
31 chr1:211535000-211549800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
32 chr1:211535000-211555000 Weak transcription A549 lung
33 chr1:211535400-211555800 Weak transcription Left Ventricle heart
34 chr1:211537200-211551200 Strong transcription Primary T helper cells PMA-I stimulated --
35 chr1:211539600-211550000 Strong transcription Primary mononuclear cells fromperipheralblood Blood
36 chr1:211539800-211555400 Weak transcription Primary T killer naive cells fromperipheralblood blood
37 chr1:211540000-211550600 Weak transcription iPS-20b Cell Line embryonic stem cell
38 chr1:211540400-211550400 Weak transcription HUES6 Cell Line embryonic stem cell
39 chr1:211540800-211555400 Weak transcription Colon Smooth Muscle Colon
40 chr1:211543200-211555800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
41 chr1:211544200-211550200 Strong transcription Primary T helper 17 cells PMA-I stimulated --
42 chr1:211544200-211555600 Weak transcription Colonic Mucosa Colon
43 chr1:211544600-211552800 Strong transcription Primary T cells from cord blood blood
44 chr1:211544800-211550200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
45 chr1:211545200-211550000 Strong transcription Sigmoid Colon Sigmoid Colon
46 chr1:211545400-211550200 Weak transcription NH-A brain
47 chr1:211545400-211555400 Weak transcription HUVEC blood vessel
48 chr1:211545600-211549800 Strong transcription Fetal Muscle Trunk muscle
49 chr1:211545600-211550200 Strong transcription Fetal Adrenal Gland Adrenal Gland
50 chr1:211545800-211555200 Weak transcription Duodenum Mucosa Duodenum

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Last update: Aug 31, 2015