Variant report

Variant	rs34442253
Chromosome Location	chr4:143700819-143700820
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10024696	0.89[EUR][1000 genomes]
rs10857399	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11100754	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11100760	0.87[EUR][1000 genomes]
rs11723982	0.81[ASN][1000 genomes]
rs11933763	0.86[EUR][1000 genomes]
rs12233703	0.83[EUR][1000 genomes]
rs12509304	0.82[ASN][1000 genomes]
rs12640389	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12644329	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13117185	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13141925	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13435565	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1373031	0.89[EUR][1000 genomes]
rs1373032	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1443183	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1443185	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1443186	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1465962	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17016777	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17016779	0.82[ASN][1000 genomes]
rs179508	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1822360	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1822361	0.89[EUR][1000 genomes]
rs1838082	0.89[EUR][1000 genomes]
rs1867214	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs191762	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1961836	0.83[EUR][1000 genomes]
rs1965828	0.89[EUR][1000 genomes]
rs2165819	0.82[ASN][1000 genomes]
rs2589994	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28420913	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3113593	0.81[EUR][1000 genomes]
rs331939	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs331940	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs331942	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs331948	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs331949	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs331950	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs331951	0.81[EUR][1000 genomes]
rs331953	0.81[ASN][1000 genomes]
rs331957	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs331963	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs331966	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4690699	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4690726	0.89[EUR][1000 genomes]
rs6537124	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6537127	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6813458	0.92[EUR][1000 genomes]
rs6816424	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6819498	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6831927	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6844306	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6845583	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6852570	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72728667	0.82[ASN][1000 genomes]
rs7376475	0.84[EUR][1000 genomes]
rs7667183	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs966457	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv595606	chr4:143631691-143729595	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv880174	chr4:143639498-143848024	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143684200-143706000	Weak transcription	Fetal Heart	heart
2	chr4:143698200-143701200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:143698400-143719000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr4:143698800-143704600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr4:143698800-143738600	Weak transcription	Aorta	Aorta
6	chr4:143699000-143714600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr4:143700200-143701600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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